Oncogenic mutations at the EGFR ectodomain structurally converge to remove a steric hindrance on a kinase-coupled

Laura Orellana1,2, Amy H Thorne3, Rafael Lema4

  • 1Science for Life Laboratory, KTH Royal Institute of Technology, 17165 Solna, Sweden; laura.orellana@scilifelab.se wcavenee@ucsd.edu ffurnari@ucsd.edu modesto.orozco@irbbarcelona.org.

Insights

Glioblastoma mutations in epidermal growth factor receptor (EGFR) extracellular domain (ECD) promote an intermediate state, exposing a cancer epitope. This convergence of mutations allows for synergistic cotargeting with antibodies and inhibitors.

Area of Science:

  • Molecular Biology
  • Structural Biology
  • Cancer Research

Background:

  • Epidermal growth factor receptor (EGFR) signaling is crucial for cell growth and is often dysregulated in glioblastomas (GBMs).
  • EGFR activation involves a conformational change in its extracellular domain (ECD) from a closed to an open state.
  • GBMs exhibit heterogeneous mutations in the EGFR ECD, but their structural and functional impact remains unclear.

Purpose of the Study:

  • To investigate the conformational effects of missense mutations in the EGFR ECD in glioblastomas.
  • To understand how different EGFR ECD mutations converge to a common oncogenic state.
  • To explore potential therapeutic strategies targeting this common intermediate state.

Main Methods:

  • Utilized elastic network models (ENMs) and molecular dynamics (MD) simulations to study EGFR ECD conformational changes.
  • Employed small-angle X-ray scattering (SAXS) for experimental validation of simulated intermediate states.
  • Conducted fluorescence-activated cell sorting (FACS), in vitro, and in vivo experiments to assess epitope accessibility and oncogenicity.

Main Results:

  • GBM-associated missense mutations in the EGFR ECD can promote spontaneous untethering to a compact intermediate state.
  • This intermediate state involves the rotation of the N-TR1 fragment, exposing a cryptic epitope (806-epitope) characteristic of cancer cells.
  • Both missense and deletion mutations (like EGFRvIII) converge to remove steric hindrance from the 806-epitope, which is allosterically coupled to an intermediate kinase and increased oncogenicity.

Conclusions:

  • Structural and functional equivalence exists between different classes of EGFR ECD mutations in GBMs, all leading to the exposure of the 806-epitope.
  • The exposed 806-epitope is linked to an intermediate kinase conformation associated with increased oncogenicity.
  • Synergistic cotargeting of this intermediate state with antibodies (mAb806) and inhibitors presents a promising therapeutic strategy for GBMs.

Related Concept Videos

Convergent Evolution01:54

Convergent Evolution

Evolution shapes the features of organisms over time, ensuring that they are suited for the environments in which they live. Sometimes, selection pressure leads to the rise of similar but unrelated adaptations in organisms with no recent common ancestors, a process known as convergent evolution.
31.6K
Protein Kinases and Phosphatases02:54

Protein Kinases and Phosphatases

Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
15.0K
Mutations01:39

Mutations

Overview
94.4K
Radical Reactivity: Steric Effects01:10

Radical Reactivity: Steric Effects

The presence of electron-donating, electron-withdrawing, or conjugating groups adjacent to a radical center, imparts electronic stabilization to the radicals. Examples of such electronically-stabilized radicals are triphenylmethyl, tetramethylpiperidine‐N‐oxide, and 2,2‐diphenyl‐1‐picrylhydrazyl. These radicals are remarkably stable and are known as persistent radicals. Some of the persistent radicals can even be isolated and purified.
Along with electronic...
2.4K
Viral Mutations00:36

Viral Mutations

A mutation is a change in the sequence of bases of DNA or RNA in a genome. Some mutations occur during replication of the genome due to errors made by the polymerase enzymes that replicate DNA or RNA. Unlike DNA polymerase, RNA polymerase is prone to errors because it is not capable of “proofreading” its work. Viruses with RNA-based genomes, like HIV, therefore accrue mutations faster than viruses with DNA-based genomes. Because mutation and recombination provide the raw material...
39.8K
Region of Convergence01:17

Region of Convergence

The z-transform is a powerful mathematical tool used in the analysis of discrete-time signals and systems. It is a crucial tool in the analysis of discrete-time systems, but its convergence is limited to specific values of the complex variable z. This range of values, known as the Region of Convergence (ROC), is fundamental in determining the behavior and stability of a system or signal. The ROC defines the region in the complex plane where the z-transform converges, which can take various...
911