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Updated: Jan 25, 2026

Mapping Absolute DNA Density in Cell Nuclei using Single-molecule Localization Microscopy
Published on: November 11, 2025
Combining 3D single molecule localization strategies for reproducible bioimaging
Clément Cabriel1, Nicolas Bourg2, Pierre Jouchet2
1Institut des Sciences Moléculaires d'Orsay, CNRS, Univ. Paris-Sud, Université Paris-Saclay, bâtiment 520, rue André Rivière, 91405, Orsay Cedex, France. clement.cabriel@u-psud.fr.
This study introduces a 3D super-resolution microscopy technique achieving 15nm precision. The method offers drift-free, tilt-insensitive imaging, ideal for multicolor biological applications.
Area of Science:
- Biophysics
- Microscopy
- Optical Imaging
Background:
- Super-resolution microscopy is crucial for visualizing cellular structures.
- Existing methods often struggle with axial localization accuracy and stability.
Purpose of the Study:
- To develop a 3D super-resolution technique with high and stable axial localization precision.
- To enable robust multicolor 3D imaging in biological samples.
Main Methods:
- Utilized point spread function (PSF) shaping and supercritical angle fluorescence (SAF) for axial localization.
- Employed a dual-view imaging scheme to decouple and optimize axial and lateral detection.
- Demonstrated multicolor 3D super-resolution imaging of cellular and bacterial structures.
Main Results:
- Achieved a slowly varying localization precision down to 15nm over a 1μm range.
- Provided absolute axial information, yielding weakly anisotropic 3D resolution.
- Demonstrated drift-free, tilt-insensitive, and achromatic imaging performance.
Conclusions:
- The developed technique is readily implementable and robust against experimental biases.
- It is well-suited for multicolor 3D super-resolution microscopy of biological samples.
- The method facilitates imaging across multiple depths for comprehensive biological studies.
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