Biallelic variants in DNA2 cause microcephalic primordial dwarfism
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Published on: December 1, 2023
Žygimantė Tarnauskaitė1, Louise S Bicknell1, Joseph A Marsh1
1MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom.
Abstract:
Microcephalic primordial dwarfism (MPD) is a group of rare single-gene disorders characterized by the extreme reduction in brain and body size from early development onwards. Proteins encoded by MPD-associated genes play important roles in fundamental cellular processes, notably genome replication and repair. Here we report the identification of four MPD individuals with biallelic variants in DNA2, which encodes an adenosine triphosphate (ATP)-dependent helicase/nuclease involved in DNA replication and repair. We demonstrate that the two intronic variants (c.1764-38_1764-37ins(53) and c.74+4A>C) found in these individuals substantially impair DNA2 transcript splicing. Additionally, we identify a missense variant (c.1963A>G), affecting a residue of the ATP-dependent helicase domain that is highly conserved between humans and yeast, with the resulting substitution (p.Thr655Ala) predicted to directly impact ATP/ADP (adenosine diphosphate) binding by DNA2. Our findings support the pathogenicity of these variants as biallelic hypomorphic mutations, establishing DNA2 as an MPD disease gene.
Insights
Microcephalic primordial dwarfism (MPD) is linked to DNA2 gene mutations. These variants disrupt DNA replication and repair, causing severe growth reduction from early development.
Area of Science:
- Genetics
- Molecular Biology
- Developmental Biology
Background:
- Microcephalic primordial dwarfism (MPD) comprises rare single-gene disorders.
- Affected individuals exhibit extreme reductions in brain and body size early in development.
- MPD-associated genes are crucial for fundamental cellular processes like genome replication and repair.
Observation:
- Four MPD individuals with biallelic variants in the DNA2 gene were identified.
- DNA2 encodes an ATP-dependent helicase/nuclease essential for DNA replication and repair.
- Two intronic variants (c.1764-38_1764-37ins(53) and c.74+4A>C) were found to impair DNA2 transcript splicing.
Findings:
- A missense variant (c.1963A>G) affects a highly conserved residue in the ATP-dependent helicase domain.
- The substitution (p.Thr655Ala) is predicted to directly impact ATP/ADP binding by DNA2.
- These variants function as biallelic hypomorphic mutations, reducing DNA2 activity.
Implications:
- DNA2 is established as a novel disease gene for microcephalic primordial dwarfism.
- Understanding DNA2's role provides insights into MPD pathogenesis.
- This discovery opens avenues for potential therapeutic strategies targeting DNA replication and repair pathways.
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