Related Experiment Video
Updated: Jan 25, 2026

Population and Single-Cell Analysis of Antibiotic Persistence in Escherichia coli
Published on: March 24, 2023
Enhanced disinfection of bacterial populations by nutrient and antibiotic challenge timing
1Department of Mathematics, 208 Love Building, 1017 Academic Way, Florida State University, Tallahassee, FL 32306, USA.
Abstract:
Several difficult to treat illnesses like tuberculosis, chronic pneumonia, and inner ear infections are caused by tolerant bacteria enmeshed in a biofilm. Bacterial tolerance can be genotypic (resistance-i.e. MRSA), phenotypic (non-heritable) or environmental (e.g. nutrient gradients). Persister formation is a phenotypic expression and this phenotype is highly tolerant of disinfection. Constant dosing is typically ineffective and to generate an effective treatment protocol, we need to understand the dynamics of persister cells. In this study, we investigate how manipulating the application of antibiotics and addition of nutrients enhances the disinfection of a bacterial population in batch culture. Eliminating persister bacteria is considered as a challenge for the food industry or wastewater treatment, since the failure may result in food contamination and disease transmission. Previous studies focused on the antimicrobial agent as a control variable to eliminate the bacterial population. In addition to antibiotic, we consider the significance of the nutrient in eradicating the susceptible and persister cells since the disinfection of susceptible population depends on the nutrient intake. We present a mathematical model that captures the dynamics between susceptible and persister bacteria with antibiotic and nutrient control variables. We investigate the optimal dose-withdrawal of antibiotic timing in several cases including constant nutrient in time, dynamic nutrient in time and piecewise constant nutrient in time.
Insights
This study explores how nutrient availability and antibiotic application timing impact bacterial disinfection. Optimizing these factors can improve the eradication of tolerant bacteria, including persister cells, in various settings.
Area of Science:
- Microbiology
- Mathematical Biology
- Biotechnology
Background:
- Difficult-to-treat infections are often caused by tolerant bacteria within biofilms.
- Bacterial tolerance can be genotypic, phenotypic, or environmental, with persister cells representing a highly tolerant phenotype.
- Current disinfection protocols are often ineffective against persister bacteria.
Purpose of the Study:
- To investigate how manipulating antibiotic application and nutrient availability can enhance bacterial disinfection.
- To understand the dynamics of susceptible and persister bacterial populations under different treatment conditions.
- To develop a mathematical model for optimizing antibiotic and nutrient control strategies.
Main Methods:
- Development of a mathematical model to simulate bacterial population dynamics.
- Analysis of susceptible and persister bacterial interactions with antibiotic and nutrient variables.
- Investigation of optimal antibiotic dose-withdrawal timing under various nutrient conditions (constant, dynamic, piecewise constant).
Main Results:
- Nutrient availability significantly influences the disinfection of both susceptible and persister bacterial populations.
- The timing of antibiotic application and withdrawal, in conjunction with nutrient levels, is crucial for effective eradication.
- The study presents a model that captures these complex dynamics.
Conclusions:
- Optimizing antibiotic dosing strategies alongside nutrient management is essential for effective bacterial disinfection.
- This approach holds potential for improving treatments for persistent bacterial infections and applications in food safety and wastewater treatment.
- Further research into the dynamics of persister cells and their interaction with environmental factors is warranted.
Related Concept Videos
Antibiotic Selection
Cleaning, Sterilization, and Disinfection
Cleaning
The cleaning process usually involves using water with detergents or enzymatic cleaner and removing foreign material from objects and surfaces, including organic material such as body fluids or inorganic material like soil. Cleaning is performed before high-level disinfection and sterilization because foreign materials on the cover of the devices interfere with process...
Absorption of Nutrients
Enterocytes, which are specialized polar epithelial cells, line the mucosa of the small intestinal walls. These cells...
Population Growth
Conservation of Small Populations
What is Population Genetics?

