Related Experiment Video
Updated: Jan 25, 2026

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies
Published on: August 20, 2021
Complete genome sequence of bile-isolated Enterococcus avium strain 352
Tao Yu1,2, Lixiang Li1,2, Qilin Zhao3
11Department of Gastroenterology, Qilu Hospital, Shandong University, 107 Wenhuaxi Road, Jinan, 250012 Shandong People's Republic of China.
Enterococcus avium strain 352, isolated from human bile, possesses genes for virulence and bile adaptation. This genomic study sheds light on its pathogenic potential and survival mechanisms in the biliary environment.
Area of Science:
- Microbiology
- Genomics
- Pathogenesis
Background:
- Enterococcus avium is a Gram-positive bacterium causing severe infections like bacteremia.
- The pathogenic mechanisms and niche adaptation strategies of E. avium remain largely unknown.
Observation:
- Whole genome sequencing of E. avium strain 352, isolated from human bile, was performed.
- The genome comprises a 4.8 Mb chromosome and an 87.7 Kb plasmid.
- The genome contains genes associated with bile adaptation (e.g., bsh, sbcC) and virulence (e.g., esp, fss1).
Findings:
- The E. avium strain 352 genome harbors numerous virulence-associated genes.
- Specific genes identified suggest a role in adapting to and surviving within the bile environment.
- The bacterium possesses a significant number of protein-coding sequences on both its chromosome and plasmid.
Implications:
- The identified virulence factors highlight the potential of E. avium strain 352 to cause infections.
- Genes linked to bile adaptation may explain its persistence in the biliary tract.
- Further comparative genomics can illuminate the evolutionary path of E. avium pathogenesis.
Related Concept Videos
Genomics
Bile
Bile is released when dietary fats enter...
Genomic Imprinting and Inheritance
The expression of some genes depends on which parent passed the gene to the offspring, through a phenomenon known as...
Genome Size and the Evolution of New Genes
Cis-regulatory Sequences
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes

