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Updated: Jan 25, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Targeted Sequencing Study to Uncover Shared Genetic Susceptibility Between Peripheral Artery Disease and Coronary
Maya S Safarova1, Xiao Fan1, Erin E Austin1
1From the Department of Cardiovascular Medicine (M.S.S., X.F., E.E.A., I.J.K.), Mayo Clinic, Rochester, MN.
Insights
Genetic variants associated with coronary heart disease (CHD) also increase risk for peripheral artery disease (PAD). This study identified shared genetic factors, including common variants in SH2B3, ABO, and ZEB2, contributing to both conditions.
Area of Science:
- Cardiovascular Genetics
- Atherosclerotic Vascular Disease Research
Background:
- Peripheral artery disease (PAD) and coronary heart disease (CHD) are both manifestations of atherosclerotic vascular disease.
- The extent of shared genetic susceptibility between PAD and CHD remains unclear.
Purpose of the Study:
- To investigate whether genetic susceptibility variants associated with CHD are also associated with PAD.
- To identify common and low-frequency/rare variants contributing to shared genetic risk.
Main Methods:
- Targeted sequencing of 41 genomic regions previously associated with CHD in genome-wide association studies.
- Analysis of 1749 PAD cases and 1855 controls of European ancestry.
- Association testing for common variants and gene-level analyses for low-frequency/rare variants using sequence kernel association test and permutation test.
Main Results:
- Common variants in SH2B3, ABO, and ZEB2 were significantly associated with PAD after Bonferroni correction (P<4.5×10-5).
- Gene-level analyses revealed the strongest associations for LPL and SH2B3.
- These findings highlight shared genetic underpinnings between CHD and PAD.
Conclusions:
- Targeted sequencing of CHD-associated genomic regions identified common variants and genes associated with PAD.
- This research elucidates the shared genetic susceptibility between coronary heart disease and peripheral artery disease.
- The study provides insights into the genetic basis of atherosclerotic vascular disease manifestations.
Abstract:
Objective- It is unclear to what extent genetic susceptibility variants are shared between peripheral artery disease (PAD) and coronary heart disease (CHD), both manifestations of atherosclerotic vascular disease. We investigated whether common and low-frequency/rare variants in loci associated with CHD are also associated with PAD. Approach and Results- Targeted sequencing of 41 genomic regions associated with CHD in genome-wide association studies was performed in 1749 PAD cases (65±11 years, 61% men) and 1855 controls (60±11 years, 56% men) of European ancestry. PAD cases had a resting/postexercise ankle-brachial index ≤0.9, or history of lower extremity revascularization; controls had no history of PAD. We tested the association of common (defined as minor allele frequency ≥5%) variants with PAD assuming an additive genetic model with adjustment for age and sex. To identify low-frequency/rare variants (minor allele frequency <5%) associated with PAD, we conducted gene-level analyses using sequence kernel association test and permutation test. After Bonferroni correction, we found common variants in SH2B3, ABO, and ZEB2 to be associated with PAD ( P<4.5×10-5). At the gene level, the strongest associations were for LPL and SH2B3. Conclusions- Targeted sequencing of 41 genomic regions associated with CHD revealed several common variants/genes to be associated with PAD, highlighting the basis of shared genetic susceptibility between CHD and PAD.
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