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Updated: Jan 24, 2026

A Practical Guide to Phylogenetics for Nonexperts
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A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

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Interactive web-based visualization and sharing of phylogenetic trees using phylogeny.IO.

Nikola Jovanovic1, Alexander S Mikheyev1,2

  • 1Ecology and Evolution Unit, Okinawa Institute of Science and Technology Graduate University, 1919-1 Tancha, Onna-son, Okinawa, Japan.

Nucleic Acids Research
|May 23, 2019
PubMed
Summary
This summary is machine-generated.

Phylogenetic trees are hard to share and visualize. The new phylogeny.IO web server allows easy import, annotation, and sharing of interactive phylogenetic trees for blogs and lectures.

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Area of Science:

  • Evolutionary Biology
  • Bioinformatics
  • Computational Biology

Background:

  • Traditional static formats hinder visualization and sharing of large phylogenetic trees.
  • Complex datasets with multiple data layers are difficult for readers to interpret.
  • Existing methods lack intuitive interfaces for interactive tree annotation and dissemination.

Purpose of the Study:

  • To introduce phylogeny.IO, a web server for creating and sharing interactive phylogenetic trees.
  • To provide a user-friendly platform for annotating and visualizing complex phylogenetic data.
  • To facilitate the embedding of interactive trees in various online platforms.

Main Methods:

  • Development of a web server utilizing Data Driven Document (D3) JavaScript library.
  • Implementation of static and dynamic annotation features for phylogenetic trees.
  • Enabling saving and sharing of annotated trees as embeddable HTML objects.

Main Results:

  • phylogeny.IO allows easy import and annotation of phylogenetic trees.
  • Interactive trees with static and dynamic annotations can be generated.
  • Annotated trees are shareable via iframe objects for web embedding.

Conclusions:

  • phylogeny.IO simplifies the process of sharing and visualizing complex phylogenetic data.
  • The platform offers an intuitive interface for researchers to annotate and disseminate their findings.
  • It enhances the accessibility of phylogenetic information for broader audiences through web integration.