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Identification of Circular RNAs using RNA Sequencing
Published on: November 14, 2019
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Transforming activity of an oncoprotein-encoding circular RNA from human papillomavirus
Jiawei Zhao1, Eunice E Lee1, Jiwoong Kim2
1Department of Dermatology, UT Southwestern Medical Center, Dallas, TX, 75390, USA.
Nature Communications
|May 26, 2019
Summary
Human papillomaviruses (HPVs) create circular RNAs (circRNAs) that encode the E7 oncogene. These virus-derived circRNAs are functional, promoting cancer cell growth and oncoprotein production.
Area of Science:
- Virology
- Molecular Biology
- Oncology
Background:
- Circular RNAs (circRNAs) are prevalent but largely uncharacterized.
- Virus-derived circRNAs have been identified in gamma-herpesviruses.
- The role of circRNAs in human papillomavirus (HPV) infections was unknown.
Purpose of the Study:
- To investigate the generation and function of circRNAs in oncogenic human papillomaviruses (HPVs).
- To determine if HPV-derived circRNAs can encode proteins and influence cancer progression.
Main Methods:
- Inverse RT-PCR and northern blotting to detect HPV16 circE7.
- N6-methyladenosine (m6A) modification analysis.
- Subcellular localization and polysome association studies.
- In vitro and in vivo experiments disrupting circE7 in cervical cancer cells.
- Analysis of TCGA RNA-Seq data.
Main Results:
- Oncogenic HPVs, including HPV16, generate circRNAs that encompass the E7 oncogene (circE7).
- HPV16 circE7 is N6-methyladenosine (m6A) modified, cytoplasmic, polysome-associated, and translated into E7 oncoprotein.
- Disrupting circE7 in CaSki cervical cancer cells reduced E7 protein levels and inhibited cancer cell growth.
- CircE7 was detected in HPV-positive cancer data and cell lines.
Conclusions:
- Virus-derived, protein-encoding circRNAs are biologically functional.
- HPV-generated circE7 contributes to the transforming properties of HPV and cancer cell proliferation.
- CircE7 represents a novel therapeutic target for HPV-associated cancers.
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