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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Pathogenic variants in PLOD3 result in a Stickler syndrome-like connective tissue disorder with vascular
Lisa Jean Ewans1,2, Alison Colley3, Carles Gaston-Massuet4
1St Vincent's Clinical School, Faculty of Medicine, University of New South Wales, Darlinghurst, New South Wales, Australia lisa.ewans@gmail.com.
Insights
Pathogenic variants in the PLOD3 gene cause a rare connective tissue disorder (CTD) with Stickler-like features. Early diagnosis improves management of ocular and vascular complications.
Area of Science:
- Genetics
- Connective Tissue Disorders
- Molecular Biology
Background:
- Pathogenic variants in the PLOD3 gene are rarely associated with connective tissue disorders (CTDs).
- This study further characterizes the clinical phenotype of PLOD3-related CTD.
- A clinical diagnostic label is proposed to enhance recognition and diagnosis.
Observation:
- Three individuals from a consanguineous family with a homozygous PLOD3 variant were studied.
- PLOD3 mRNA expression was analyzed in developing human embryos.
- Phylogenetic gene expression similarities were assessed using mouse microarray data.
Findings:
- Key clinical features include ocular abnormalities (retinal detachment risk), sensorineural hearing loss, joint contractures, scoliosis, and vascular dissection risk.
- The phenotype overlaps with Stickler syndrome, Ehlers-Danlos syndrome (EDS), and epidermolysis bullosa (EB).
- PLOD3 expression localizes to developing ocular, auditory, cardiovascular, and skeletal tissues.
Implications:
- Pathogenic PLOD3 variants result in a distinct Stickler-like syndrome with vascular complications.
- Early identification of PLOD3 variants is crucial for monitoring comorbidities.
- Timely diagnosis can prevent severe ocular and vascular adverse outcomes.
Background:
Pathogenic PLOD3 variants cause a connective tissue disorder (CTD) that has been described rarely. We further characterise this CTD and propose a clinical diagnostic label to improve recognition and diagnosis of PLOD3-related disease.
Methods:
Reported PLOD3 phenotypes were compared with known CTDs utilising data from three further individuals from a consanguineous family with a homozygous PLOD3 c.809C>T; p.(Pro270Leu) variant. PLOD3 mRNA expression in the developing embryo was analysed for tissue-specific localisation. Mouse microarray expression data were assessed for phylogenetic gene expression similarities across CTDs with overlapping clinical features.
Results:
Key clinical features included ocular abnormalities with risk for retinal detachment, sensorineural hearing loss, reduced palmar creases, finger contractures, prominent knees, scoliosis, low bone mineral density, recognisable craniofacial dysmorphisms, developmental delay and risk for vascular dissection. Collated clinical features showed most overlap with Stickler syndrome with variable features of Ehlers-Danlos syndrome (EDS) and epidermolysis bullosa (EB). Human lysyl hydroxylase 3/PLOD3 expression was localised to the developing cochlea, eyes, skin, forelimbs, heart and cartilage, mirroring the clinical phenotype of this disorder.
Conclusion:
These data are consistent with pathogenic variants in PLOD3 resulting in a clinically distinct Stickler-like syndrome with vascular complications and variable features of EDS and EB. Early identification of PLOD3 variants would improve monitoring for comorbidities and may avoid serious adverse ocular and vascular outcomes.
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