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Updated: Jan 24, 2026

In Vitro Ubiquitination and Deubiquitination Assays of Nucleosomal Histones
Published on: July 25, 2019
USP16-mediated deubiquitination of calcineurin A controls peripheral T cell maintenance
Yu Zhang1,2, Rong-Bei Liu2, Qian Cao2
1MOE Key Laboratory of Biosystems Homeostasis and Protection, Life Sciences Institute, Zhejiang University, Hangzhou, China.
Abstract:
Calcineurin acts as a calcium-activated phosphatase that dephosphorylates various substrates, including members of the nuclear factor of activated T cells (NFAT) family, to trigger their nuclear translocation and transcriptional activity. However, the detailed mechanism regulating the recruitment of NFATs to calcineurin remains poorly understood. Here, we report that calcineurin A (CNA), encoded by PPP3CB or PPP3CC, is constitutively ubiquitinated on lysine 327, and this polyubiquitin chain is rapidly removed by ubiquitin carboxyl-terminal hydrolase 16 (USP16) in response to intracellular calcium stimulation. The K29-linked ubiquitination of CNA impairs NFAT recruitment and transcription of NFAT-targeted genes. USP16 deficiency prevents calcium-triggered deubiquitination of CNA in a manner consistent with defective maintenance and proliferation of peripheral T cells. T cell-specific USP16 knockout mice exhibit reduced severity of experimental autoimmune encephalitis and inflammatory bowel disease. Our data reveal the physiological function of CNA ubiquitination and its deubiquitinase USP16 in peripheral T cells. Notably, our results highlight a critical mechanism for the regulation of calcineurin activity and a novel immunosuppressive drug target for the treatment of autoimmune diseases.
Insights
Ubiquitination of calcineurin A (CNA) regulates T cell activation. Deubiquitinase USP16 removes these chains, controlling NFAT activity and offering a potential target for treating autoimmune diseases.
Area of Science:
- Immunology
- Molecular Biology
- Biochemistry
Background:
- Calcineurin (CN) is a calcium-activated phosphatase crucial for T cell activation, dephosphorylating NFATs to promote gene transcription.
- The precise mechanisms governing NFAT recruitment to CN are not fully elucidated.
- Ubiquitination is a key post-translational modification regulating protein function.
Purpose of the Study:
- To investigate the role of calcineurin ubiquitination in regulating NFAT signaling.
- To identify the deubiquitinase responsible for calcineurin modification.
- To explore the therapeutic potential of targeting this pathway in autoimmune diseases.
Main Methods:
- Western blotting to detect ubiquitination of calcineurin A (CNA).
- Analysis of NFAT recruitment and transcriptional activity.
- Generation and analysis of T cell-specific USP16 knockout mice.
- Assessment of disease severity in mouse models of experimental autoimmune encephalitis and inflammatory bowel disease.
Main Results:
- CNA is constitutively ubiquitinated at lysine 327, and this modification is reversed by USP16 upon calcium stimulation.
- K29-linked ubiquitination of CNA inhibits NFAT recruitment and downstream gene transcription.
- USP16 deficiency impairs calcium-triggered CNA deubiquitination, leading to defective T cell maintenance and proliferation.
- T cell-specific USP16 knockout mice showed reduced disease severity in autoimmune models.
Conclusions:
- CNA ubiquitination, regulated by USP16, is a critical mechanism controlling T cell activation.
- USP16 plays a vital role in maintaining peripheral T cell homeostasis.
- Targeting the CNA ubiquitination pathway presents a novel strategy for immunosuppressive therapy in autoimmune diseases.
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