Related Experiment Video
Updated: Jan 24, 2026

Free Radicals in Chemical Biology: from Chemical Behavior to Biomarker Development
Published on: April 15, 2013
π-Radical Formation by Pyrrolic H Abstraction of Phthalocyanine Molecules on Molybdenum Disulfide
Gaël Reecht1, Nils Krane1, Christian Lotze1
1Fachbereich Physik , Freie Universität Berlin , Arnimallee 14 , 14195 Berlin , Germany.
Abstract:
For a molecular radical to be stable, the environment needs to be inert. Furthermore, an unpaired electron is less likely to react chemically when it is placed in an extended orbital. Here, we use the tip of a scanning tunneling microscope to abstract one of the pyrrolic hydrogen atoms from phthalocyanine (H2Pc) deposited on a single layer of molybdenum disulfide (MoS2) on Au(111). We show the successful dissociation reaction by current-induced three-level fluctuations reflecting the inequivalent positions of the remaining H atom in the pyrrole center. Tunneling spectroscopy reveals two narrow resonances inside the semiconducting energy gap of MoS2 with their spatial extent resembling the highest occupied molecular orbital (HOMO) of H2Pc. By comparison to simple density functional calculations of the isolated molecule, we show that these correspond to a single occupation of the Coulomb-split highest molecular orbital of HPc. We conclude that the dangling σ bond after N-H bond cleavage is filled by an electron from the delocalized HOMO. The extended nature of the HOMO together with the inert nature of the MoS2 layer favors the stabilization of this radical state.
Related Concept Videos
Radical Formation: Abstraction
Even though homolysis produces radicals, it is different from radical...
π Molecular Orbitals of the Allyl Radical
The allyl systems have identical molecular orbitals but differ in the number of π electrons....
Radical Formation: Overview
Radicals from spin-paired molecules:
Radicals can be obtained from spin-paired molecules either by homolysis or electron transfer. While two radicals are formed in the former, an electron is added in the...
Radical Formation: Homolysis
Radical Formation: Addition
Similar to charge conservation in chemical reactions, spin conservation is implicit for radical reactions. Accordingly, the product formed must possess an...
Radical Formation: Elimination

