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Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution
Published on: February 24, 2015
Programmed Epigenetic DNA Methylation-Mediated Reduced Neuroprogenitor Cell Proliferation and Differentiation in
Mina Desai1, Guang Han2, Tie Li2
1Perinatal Research Laboratory, Los Angeles Biomedical Research Institute at Harbor-UCLA Medical Center, Department of Obstetrics and Gynecology, Torrance, CA, USA; Department of Obstetrics and Gynecology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Insights
Small-for-gestational age (SGA) newborns show impaired neurogenesis due to reduced DNA methyltransferase 1 (DNMT1) expression, impacting brain development and increasing risks for obesity and neurodevelopmental issues.
Area of Science:
- Neuroscience
- Developmental Biology
- Epigenetics
Background:
- Small-for-gestational age (SGA) newborns face increased risks for hyperphagia, obesity, and neurodevelopmental deficits.
- SGA hypothalamic neuroprogenitor cells (NPCs) display reduced proliferation and neuronal differentiation.
- DNA methyltransferase 1 (DNMT1) is crucial for regulating neurogenesis, maintaining NPC proliferation, and directing neuronal versus astroglial fate.
Purpose of the Study:
- To investigate the hypothesis that epigenetic dysregulation of DNMT1 underlies impaired NPC proliferation and differentiation in SGA offspring.
- To elucidate the role of DNMT1 in mediating neurogenesis deficits in SGA newborns.
Main Methods:
- Primary hypothalamic NPCs from SGA and control rat offspring were cultured and treated with DNMT1-specific siRNA.
- NPC proliferation and expression of key markers (nestin, Hes1, Tuj1, GFAP) were assessed.
- In vivo studies were conducted to validate in vitro findings.
Main Results:
- SGA NPCs exhibited lower basal DNMT1 levels, reduced proliferation, and impaired differentiation compared to controls.
- DNMT1 inhibition in both SGA and control NPCs decreased proliferation and neuronal markers while increasing glial markers.
- In vivo data confirmed that reduced DNMT1 and Hes1 expression in SGA offspring contribute to impaired neurogenesis.
Conclusions:
- Impaired neurogenesis in SGA offspring is partly mediated by epigenetic mechanisms involving reduced DNMT1 expression and Hes1 suppression.
- These neurodevelopmental deficits may extend beyond the hypothalamus, potentially affecting cognitive and neurobehavioral outcomes.
Abstract:
Small-for-gestational age (SGA) human newborns have an increased risk of hyperphagia and obesity, as well as a spectrum of neurologic and neurobehavioral abnormalities. We have shown that the SGA hypothalamic (appetite regulatory site) neuroprogenitor cells (NPCs) exhibit reduced proliferation and neuronal differentiation. DNA methylation (DNA methyltransferase; DNMT1) regulates neurogenesis by maintaining NPC proliferation and suppressing premature differentiation. Once differentiation ensues, DNMT1 preferentially promotes neuronal and inhibits astroglial fate. We hypothesized that the programmed dysfunction of NPC proliferation and differentiation in SGA offspring is epigenetically mediated via DNMT1. Pregnant rats received either ad libitum food (Control) or were 50% food-restricted to create SGA offspring. Primary hypothalamic NPCs from 1 day old SGA and Controls newborns were cultured and transfected with nonspecific or DNMT1-specific siRNA. NPC proliferation and protein expression of specific markers of NPC (nestin), neuroproliferative transcription factor (Hes1), neurons (Tuj1) and astrocytes (GFAP) were determined. Under basal conditions, SGA NPCs exhibited decreased DNMT1 and reduced proliferation and differentiation, as compared to Controls. In both SGA and Controls, DNMT1 siRNA in complete media inhibited NPC proliferation, consistent with reduced expression of nestin and Hes1. In differentiation media, DNMT1 siRNA decreased expression of Tuj1 but increased GFAP. In vivo data replicated these findings. In SGA offspring, impaired neurogenesis is epigenetically mediated, in part, via reduction in DNMT1 expression and suppression of Hes1 resulting in NPC differentiation. It is likely that the maturation of regions beyond the hypothalamus (e.g., cerebral cortex, hippocampus) may be impacted, contributing to poor cognitive and neurobehavioral competency in SGA offspring.
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