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Updated: Jan 23, 2026

Microbial Communities in Nature and Laboratory - Interview
Published on: May 28, 2007
Dynamic and Asymmetric Changes of the Microbial Communities after Cohousing in Laboratory Mice
Roberta Caruso1, Masashi Ono2, Marie E Bunker1
1Department of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA; Rogel Cancer Center, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Abstract:
Horizontal transmission of the microbiota between different individuals is widely used to normalize the microbiota in laboratory mice. However, little is known about the dynamics of microbial communities and the level of microbiota transmission after cohousing. We extensively analyzed the fecal microbiota in Jackson and Taconic C57BL/6 mice to study horizontal transmission after weaning. Changes in the microbiota were clearly detected on day 3, almost plateaued on day 7, and resulted in near-comparable composition by day 28 after cohousing. Notably, the transmission of bacterial species was asymmetric in kinetics and abundance, resulting in a microbiota that is more similar to that of Jackson mice than Taconic. Several operational taxonomic units (OTUs) increased their abundance rapidly after cohousing in Taconic mice whereas several OTUs including two mucus-associated bacteria increased their abundance with delayed kinetics in Jackson mice. These studies provide insight into the dynamics and normalization of the microbiota during horizontal transmission.
Insights
Cohousing mice facilitates horizontal microbiota transmission, normalizing gut microbial communities. Transmission kinetics and abundance are asymmetric, with the resulting microbiota resembling the Jackson mouse strain more closely.
Area of Science:
- Microbiology
- Animal Models
- Gut Microbiome Research
Background:
- Horizontal transmission of microbiota is a common method for normalizing gut microbial communities in laboratory mice.
- Limited understanding exists regarding the dynamics of microbial communities and transmission levels following cohousing.
Purpose of the Study:
- To investigate the dynamics and extent of horizontal microbiota transmission between different mouse strains after weaning.
- To analyze changes in fecal microbiota composition and bacterial species abundance over time post-cohousing.
Main Methods:
- Fecal microbiota analysis was performed on Jackson and Taconic C57BL/6 mice after cohousing.
- Changes in microbial community composition and operational taxonomic unit (OTU) abundance were tracked over 28 days.
Main Results:
- Significant microbiota changes were detected by day 3, plateauing by day 7, and nearing comparable composition by day 28.
- Bacterial species transmission exhibited asymmetric kinetics and abundance, favoring the Jackson mouse microbiota.
- Specific OTUs showed rapid increases in Taconic mice, while mucus-associated bacteria increased with delayed kinetics in Jackson mice.
Conclusions:
- Horizontal transmission effectively alters and normalizes the gut microbiota in cohoused mice.
- The transmission process is asymmetric, leading to strain-specific microbiota profiles.
- Understanding these dynamics is crucial for experimental design involving microbiota manipulation in mice.
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