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Updated: Jan 23, 2026

A Bioinformatics Pipeline for Investigating Molecular Evolution and Gene Expression using RNA-seq
Published on: May 28, 2021
Convergent eusocial evolution is based on a shared reproductive groundplan plus lineage-specific plastic genes
Michael R Warner1, Lijun Qiu2, Michael J Holmes2,3
1University of Pennsylvania, Philadelphia, PA, 19104, USA. michael.ryan.warner@gmail.com.
The genomic basis of insect eusociality involves both conserved genes and rapidly evolving, lineage-specific genes. Independent evolution of sociality in ants and bees highlights diverse genetic strategies for complex traits.
Area of Science:
- Evolutionary biology
- Genomics
- Insect behavior
Background:
- Eusociality, a complex social structure with reproductive division of labor, has evolved independently multiple times in insects.
- The genetic underpinnings of these independent evolutionary events and the extent of shared genetic mechanisms remain largely unexplored.
Purpose of the Study:
- To investigate the genomic basis of caste differentiation in two independently evolved eusocial insects: the pharaoh ant (Monomorium pharaonis) and the honey bee (Apis mellifera).
- To identify shared and lineage-specific genes associated with caste-based division of labor across different developmental stages and body segments.
Main Methods:
- Comparative transcriptomic analysis of caste-specific gene expression profiles in pharaoh ants and honey bees.
- Examination of gene expression across developmental stages and adult body segments (e.g., abdomen).
- Identification of conserved gene sets and lineage-specific gene recruitment in eusocial evolution.
Main Results:
- A conserved core of genes, upregulated in the abdomens of queens in both species and also in mated female flies, suggests a shared insect reproductive groundplan.
- Few genes showed common differential expression outside of this conserved groundplan.
- The majority of caste-associated genes are plastic, rapidly evolving, and evolutionarily young, indicating significant lineage-specific genetic innovation.
Conclusions:
- The convergent evolution of eusociality relies on a combination of highly conserved genes and novel, lineage-specific gene recruitment.
- Independent origins of sociality utilize distinct genetic pathways, shaped by both conserved genetic resources and rapid evolutionary adaptation.
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