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Hybrid SWATH/MS and HR-SRM/MS acquisition for phospholipidomics using QUAL/QUANT data processing.

Michel Raetz1, Eva Duchoslav2, Ron Bonner3

  • 1Life Sciences Mass Spectrometry, Department of Inorganic and Analytical Chemistry, University of Geneva, 24 Quai Ernest Ansermet, CH-1211, Geneva 4, Switzerland.

Analytical and Bioanalytical Chemistry
|June 16, 2019
PubMed
Summary

A novel hybrid SWATH/MS and HR-SRM/MS method enables simultaneous lipidomics analysis. This approach quantifies numerous lipid species and sum compositions in human plasma, improving lipid identification and offering broad applicability.

Keywords:
Data processingGlycerophospholipidsHILICPlasmaQUAL/QUANTSWATH

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Area of Science:

  • Analytical Chemistry
  • Biochemistry
  • Mass Spectrometry

Background:

  • Lipidomics research requires sensitive and comprehensive analytical methods.
  • Current techniques face limitations in simultaneous quantification of diverse lipid species and classes.

Purpose of the Study:

  • To develop a hybrid SWATH/MS and HR-SRM/MS acquisition strategy for enhanced lipidomics analysis.
  • To enable simultaneous monitoring of lipid sum compositions and individual lipid species.
  • To improve lipid identification and quantification in complex biological samples like human plasma.

Main Methods:

  • Integration of SWATH/MS and HR-SRM/MS with chromatographic lipid class separation.
  • Utilized multiple unit mass windows and precursor selection windows for data acquisition.
  • Employed a data processing strategy based on prediction and combinatorial analysis for lipid identification.
  • Assessed workflow robustness and precision using technical triplicates.

Main Results:

  • Simultaneous monitoring of lipid sum compositions (MS1) and up to 48 lipids/class (MS2) achieved.
  • Quantified 240 lipid sum compositions from five phospholipid classes in MS2.
  • Successfully quantified an average of 92 lipid sum compositions and 75 lipid species in human plasma.
  • Demonstrated improved lipid identification through predictive data processing.

Conclusions:

  • The developed hybrid SWATH/MS and HR-SRM/MS approach offers a robust and precise workflow for lipidomics.
  • This method significantly enhances the scope and accuracy of lipid profiling in human plasma.
  • The approach is versatile and applicable to various analytes and sample types beyond phospholipids.