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A parallel algorithm to produce long polymer chains in molecular dynamics.
C A Lemarchand1, D Bousquet1, B Schnell2
1CEA-DAM-DIF, F-91297 Arpajon, France.
This study introduces a parallel algorithm for polymer simulations, mimicking chemical polymerization to efficiently generate large polymer melts. The method produces long polymer chains with accurate properties, nearing equilibrium quickly.
Area of Science:
- Computational chemistry
- Materials science
- Polymer physics
Background:
- Generating initial polymer melt configurations for simulations above entanglement molecular weight is computationally challenging.
- Existing methods often struggle with efficiency and scalability for large systems.
Purpose of the Study:
- To adapt a chemical polymerization-mimicking algorithm for all-atom force field simulations.
- To develop a parallel and efficient method for generating initial polymer melt configurations.
Main Methods:
- Sequential bond creation and relaxation from a monomer bath.
- Parallel implementation leveraging classical molecular dynamics code structure.
- Adaptation for all-atom force fields.
Main Results:
- Generation of large systems up to 7 million atoms.
- Linear scaling of simulation time with chain length for long chains.
- Production of polymer chains up to ~2000 carbons with accurate thermodynamic and structural properties.
- Near-equilibrium chain conformations achieved within picoseconds of simulation.
Conclusions:
- The proposed algorithm offers an efficient and scalable solution for generating initial polymer melt configurations.
- The method produces high-quality polymer structures suitable for further simulation and analysis.
- The algorithm's versatility allows for the creation of various polymer architectures, including copolymers and blends.

