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Development of an Immunohistochemical Assay to Detect the Ataxia-Telangiectasia Mutated (ATM) Protein in Gastric
Rachel M Miller1, Chinedu Nworu1, Laurel McKee1
1Ventana Medical Systems Inc., a Member of the Roche Group, Tucson, AZ.
Abstract:
Ataxia-telangiectasia mutated (ATM), a key activator of DNA damage response mechanisms, represents a potential biomarker for targeted gastric carcinoma therapies. A phase II study (Study 39; NCT01063517) designed to investigate the combination olaparib plus paclitaxel in patients with recurrent or metastatic gastric cancer did not meet its primary endpoint of progression-free survival; however, an improvement in the secondary endpoint of overall survival was recorded with a greater overall survival benefit noted in patients with ATM-negative tumors. An ATM immunohistochemical (IHC) diagnostic assay was developed to identify patients who may respond favorably to targeted therapies and deployed in the confirmatory phase III GOLD trial (NCT01924533). The VENTANA ATM (Y170) assay was developed for investigational use in formalin-fixed, paraffin-embedded gastric carcinoma samples using an anti-ATM rabbit monoclonal antibody (clone Y170) and was optimized with OptiView DAB IHC Detection Kit on a BenchMark ULTRA instrument. The assay was deployed in studies assessing sensitivity, specificity, robustness, precision, and determining optimal ATM staining cutoff to define ATM-deficiency (ATM-low). The ATM (Y170) assay met all predefined product development acceptance criteria. Multiple parameters were characterized, including repeatability, reproducibility, analytical sensitivity, specificity, robustness, and product stability. The scoring algorithm was defined; gastric carcinoma samples were considered ATM-negative or ATM-positive when <25% or ≥25%, respectively, of tumor cell nuclei expressed ATM at any IHC stain intensity and nuclei of immune and/or endothelial cells expressed ATM at a moderate stain intensity (internal positive control). Results highlight reproducibility of the assay, supporting suitability for investigational use for evaluation of gastric carcinoma samples using tumor cell staining cutoff of <25% to define ATM-deficiency. Using this ATM assay, phase III GOLD trial (NCT01924533) clinical trial did not meet its primary endpoint, only suggesting, but not demonstrating, that assessment of ATM levels by IHC could possibly be useful in assessing the degree of benefit that may be achieved by adding olaparib to paxitaxel when treating gastric carcinoma. The utility of ATM (Y170) assay as a companion diagnostic requires further clinical validation.
Insights
Ataxia-telangiectasia mutated (ATM) deficiency may predict better overall survival in gastric cancer patients treated with olaparib and paclitaxel. An ATM immunohistochemical assay showed reproducibility but requires further clinical validation for companion diagnostic use.
Area of Science:
- Oncology
- Molecular Biology
- Biomarker Development
Background:
- Ataxia-telangiectasia mutated (ATM) is crucial for DNA damage response and a potential biomarker for gastric cancer.
- Previous studies suggested a potential survival benefit in ATM-negative gastric cancer patients receiving olaparib plus paclitaxel.
Purpose of the Study:
- To develop and validate an ATM immunohistochemical (IHC) assay for identifying gastric carcinoma patients who may benefit from targeted therapies.
- To assess the utility of the ATM (Y170) assay in a Phase III clinical trial.
Main Methods:
- Development and optimization of the VENTANA ATM (Y170) assay using an anti-ATM antibody on a BenchMark ULTRA instrument.
- Characterization of assay performance including sensitivity, specificity, robustness, and reproducibility.
- Definition of a scoring algorithm with a <25% tumor cell nuclei staining cutoff for ATM-deficiency.
Main Results:
- The ATM (Y170) assay met predefined acceptance criteria and demonstrated reproducibility.
- The assay is suitable for investigational use in evaluating gastric carcinoma samples for ATM-deficiency.
- The Phase III GOLD trial did not meet its primary endpoint, suggesting but not proving ATM IHC utility.
Conclusions:
- The developed ATM (Y170) IHC assay is reproducible and suitable for investigational use in gastric cancer.
- Further clinical validation is required to establish the ATM (Y170) assay's utility as a companion diagnostic.
- The study did not definitively demonstrate that ATM assessment can guide olaparib plus paclitaxel treatment decisions in gastric carcinoma.
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