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Large-Scale Multi-Omics Genome-Wide Association Studies Mo-GWAS: Guidelines for Sample Preparation and Normalization
Published on: July 27, 2021
Genome-Wide Association Study of Cerebral Microbleeds on MRI
Hong-Qi Li1, Wen-Jie Cai1, Xiao-He Hou2
1Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, No. 12 Wulumuqi Road, Shanghai, China.
Abstract:
Cerebral microbleeds are the presence of a group of pathological processes affecting the small arteries, arterioles, capillaries, and venules of the brain. Previous studies showed that cerebral microbleeds were associated with higher risk of dementia and stroke. We conducted a genome-wide association study of cerebral microbleeds to identify novel loci associated with the presence and progression of cerebral microbleeds. This study included 454 individuals composed by 176 subjects with cerebral microbleeds and 278 subjects without cerebral microbleeds in a non-Hispanic/Latino white population. Association of genetic variants with the presence and progression of cerebral microbleeds was assessed by logistic regression model. Potential genetic risk variants Apolipoprotein E (ApoE) polymorphisms were independently genotyped and checked the association with the presence and progression of cerebral microbleeds. No single-nucleotide polymorphisms (SNPs) associated with the presence or progression of cerebral microbleeds were identified at genome-wide significant level (P < 1 × 10-8). A total of 19 SNPs were associated with the presence of microbleeds at suggestive level (P < 1 × 10-5). One SNP was associated with lower progression risk for cerebral microbleeds with suggestive evidence (P < 1 × 10-5). ApoE ε4ε4 was independently associated with the presence and progression of cerebral microbleeds (odds ratio = 2.54, 95% confidence interval 1.08-6.00 and odds ratio = 5.1, 95% confidence interval 1.36-19.16). We highlighted 19 novel SNPs associated with the presence of cerebral microbleeds and one novel SNP associated with the progression of cerebral microbleeds for the first time. ApoE ε4ε4 was confirmed independently associated with the presence and progression of cerebral microbleeds.
Insights
This genome-wide study identified 19 novel SNPs linked to cerebral microbleeds and one SNP influencing their progression. Apolipoprotein E ε4ε4 genotype was confirmed as a significant risk factor for both presence and progression of these brain conditions.
Area of Science:
- Neurogenetics
- Cerebrovascular Diseases
Background:
- Cerebral microbleeds (CMBs) are pathological processes affecting small brain vessels.
- CMBs are associated with an increased risk of dementia and stroke.
Purpose of the Study:
- To conduct a genome-wide association study (GWAS) to identify novel genetic loci associated with CMBs.
- To investigate the association of genetic variants with the presence and progression of CMBs.
Main Methods:
- A GWAS was performed on 454 individuals (176 with CMBs, 278 without) from a non-Hispanic/Latino white population.
- Logistic regression was used to assess the association of genetic variants with CMB presence and progression.
- Apolipoprotein E (ApoE) polymorphisms were independently genotyped and analyzed.
Main Results:
- No single-nucleotide polymorphisms (SNPs) reached genome-wide significance for CMB presence or progression.
- Nineteen SNPs showed suggestive association (P < 1x10⁻⁵) with CMB presence.
- One SNP showed suggestive association (P < 1x10⁻⁵) with lower CMB progression risk.
- ApoE ε4ε4 genotype was independently associated with both the presence (OR=2.54) and progression (OR=5.1) of CMBs.
Conclusions:
- This study highlights 19 novel SNPs associated with CMB presence and one novel SNP associated with CMB progression.
- The ApoE ε4ε4 genotype is confirmed as an independent risk factor for CMB presence and progression.
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