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Updated: Jan 23, 2026

Thermodynamics of Membrane Protein Folding Measured by Fluorescence Spectroscopy
Published on: April 28, 2011
Correspondence between thermodynamics and inference
Colin H LaMont1, Paul A Wiggins1
1Department of Bioengineering, University of Washington, 3910 15th Avenue Northeast, Box 351560, Seattle, Washington 98195, USA and Department of Microbiology, University of Washington, 3910 15th Avenue Northeast, Box 351560, Seattle, Washington 98195, USA.
Abstract:
We expand upon a natural analogy between Bayesian statistics and statistical physics in which sample size corresponds to inverse temperature. This analogy motivates the definition of two statistical quantities: a learning capacity and a Gibbs entropy. The analysis of the learning capacity, corresponding to the heat capacity in thermal physics, leads to insight into the mechanism of learning and explains why some models have anomalously high learning performance. We explore the properties of the learning capacity in a number of examples, including a sloppy model. Next, we propose that the Gibbs entropy provides a natural device for counting distinguishable distributions in the context of Bayesian inference. We use this device to define a generalized principle of indifference in which every distinguishable model is assigned equal a priori probability. This principle results in a solution to a long-standing problem in Bayesian inference: the definition of an objective or uninformative prior. A key characteristic of this approach is that it can be applied to analyses where the model dimension is unknown and circumvents the automatic rejection of higher-dimensional models in Bayesian inference.
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