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Updated: Jan 23, 2026

Crystal Structure of the N-terminal Domain of Ryanodine Receptor from Plutella xylostella
Published on: November 30, 2018
Solution structure, dynamics and function investigation of Kringle domain of human receptor tyrosine kinase-like
Xiaofang Ma1,2, Bin Liu1,2, Jiahui Yang3
1State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Science, Kunming, People's Republic of China.
Abstract:
Receptor tyrosine kinase-like orphan receptor 1 (ROR1) has been recently proposed as a potential target for cancer treatment. It was suggested that monoclonal antibodies (mAb) against the Kringle (KNG) domain of ROR1 could induce apoptosis of chronic lymphocytic leukemia cells. Here, we reported the determination of the solution structure of human ROR1-KNG (hROR1-KNG), investigation of its dynamic properties and potential binding interface by NMR spectroscopy. The obtained NMR structure of hROR1-KNG exhibits an open form at Asn47-His50 and shows obvious differences from other canonical KNGs at the corresponding lysine binding site, which implies that hROR1-KNG may interact with some non-canonical ligands. Dynamics analysis of hROR1-KNG reveal a faster local motion around the α-turn and 310-helix, which may provide flexibility to protect the proximal hydrophobic core in solution or facilitate the binding of other molecules. The intermediate-to-slow conformational exchange of Cys77-Ile79 may influence the conformation determination of disulfide bond Cys53-Cys77. Binding interface of hROR1-KNG for mAb R11 was analyzed and compared with the epitope for the functional mAbs. Previous study implies that hROR1-KNG may be involved in mediating the heterooligomerization between ROR1 and ROR2 in vivo. However, apparently, no direct interaction between hROR1-KNG and hROR2-KNG was observed from chemical shift perturbation experiment. Our work lays foundation to further functional study on interactions of hROR1-KNG with other biological relevant partners.Communicated by Ramaswamy H. Sarma.
Insights
The Kringle domain of Receptor tyrosine kinase-like orphan receptor 1 (ROR1) has a unique structure, suggesting interactions with non-canonical ligands. This study reveals ROR1-Kringle domain dynamics and binding interfaces, crucial for cancer therapy development.
Area of Science:
- Structural Biology
- Biochemistry
- Cancer Research
Background:
- Receptor tyrosine kinase-like orphan receptor 1 (ROR1) is a potential cancer therapeutic target.
- Monoclonal antibodies targeting the ROR1 Kringle (KNG) domain may induce cancer cell apoptosis.
Purpose of the Study:
- Determine the solution structure of human ROR1-KNG (hROR1-KNG).
- Investigate hROR1-KNG's dynamic properties and potential binding interfaces.
- Explore interactions with monoclonal antibodies and ROR2.
Main Methods:
- Nuclear Magnetic Resonance (NMR) spectroscopy for structure determination and dynamics analysis.
- Chemical shift perturbation experiments to assess binding interactions.
Main Results:
- The NMR structure of hROR1-KNG shows an open conformation with unique features at the lysine binding site, suggesting non-canonical ligand interactions.
- Dynamics analysis revealed local flexibility and conformational exchange, potentially influencing disulfide bond formation and ligand binding.
- The binding interface for mAb R11 was identified; no direct interaction between hROR1-KNG and hROR2-KNG was observed.
Conclusions:
- The unique structural and dynamic properties of hROR1-KNG provide a foundation for understanding its biological interactions.
- Findings are critical for developing targeted cancer therapies involving ROR1.
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