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Updated: Jan 22, 2026

An In Vitro Protocol for Evaluating MicroRNA Levels, Functions, and Associated Target Genes in Tumor Cells
Published on: May 21, 2019
MicroRNA-486-3p functions as a tumor suppressor in oral cancer by targeting DDR1
Sung-Tau Chou1,2, Hsuan-Yu Peng1, Kuan-Chi Mo1
1National Institute of Cancer Research, National Health Research Institutes, No. 35 Keyan Road, Zhunan Town, Miaoli County, 35053, Taiwan.
Background:
Discoidin domain receptor-1 (DDR1) tyrosine kinase is highly expressed in a variety of human cancers and involved in various steps of tumorigenesis. However, the precise mechanisms underlying the abnormal expression of DDR1 in oral squamous cell carcinoma (OSCC) has not been well investigated.
Methods:
The expression of DDR1 on OSCC patients was determine by quantitative real-time PCR (qRT-PCR) and immunohistochemistry. Specific targeting by miRNAs was determined by software prediction, luciferase reporter assay, and correlation with target protein expression. The functions of miR-486-3p and DDR1 were accessed by MTT and Annexin V analyses using gain- and loss-of-function approaches. Chromatin immunoprecipitation (ChIP) and methylation specific PCR (MSP) were performed to explore the molecular mechanisms by arecoline treatment.
Results:
Here, we reported that DDR1 was significantly upregulated in OSCC tissues and its levels were inversely correlated with miR-486-3p expression. The experimental results in vitro confirmed that miR-486-3p decreased DDR1 expression by targeting the 3'-UTR of DDR1 mRNA. Overexpression of miR-486-3p led to growth inhibition and apoptosis induction with a similar function by knockdown of DDR1. Aberrant methylation of ANK1 promoter was a highly prevalent in OSCC and contributes to oral carcinogenesis by epigenetic silencing of ANK1 and miR-486-3p. We found that miR-486-3p can be transcriptionally co-regulated with its host gene ANK1 through epigenetic repression. DNA methylation inhibitor treatment re-expressed ANK1 and miR-486-3p. Importantly, arecoline, a major betel nut alkaloid, recruited DNMT3B binding to ANK1 promoter for DNA methylation and then attenuated the expression of miR-486-3p in OSCC.
Conclusion:
This study was the first to demonstrate that betel nut alkaloid may recruit DNMT3B to regulate miR-486-3p/DDR1 axis in oral cancer andmiR-486-3p and DDR1 may serve as potential therapeutic targets of oral cancer.
Insights
Discoidin domain receptor-1 (DDR1) is upregulated in oral cancer, with miR-486-3p acting as a tumor suppressor by downregulating DDR1. Betel nut compounds influence this via epigenetic mechanisms, suggesting therapeutic potential.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Discoidin domain receptor-1 (DDR1) tyrosine kinase is implicated in various human cancers, but its specific role and regulation in oral squamous cell carcinoma (OSCC) remain unclear.
- Understanding the molecular mechanisms behind DDR1 dysregulation is crucial for developing targeted therapies for OSCC.
Purpose of the Study:
- To investigate the role of DDR1 and its regulatory mechanisms, particularly microRNAs, in oral squamous cell carcinoma (OSCC).
- To explore the impact of arecoline, a component of betel nut, on DDR1 expression and related epigenetic modifications in OSCC.
Main Methods:
- Quantitative real-time PCR (qRT-PCR) and immunohistochemistry were used to assess DDR1 expression in OSCC tissues.
- Luciferase reporter assays and correlation analyses identified miR-486-3p as a direct regulator of DDR1.
- Gain- and loss-of-function studies evaluated the cellular effects of miR-486-3p and DDR1; ChIP and MSP analyzed epigenetic modifications induced by arecoline.
Main Results:
- DDR1 was significantly upregulated in OSCC, inversely correlated with miR-486-3p levels.
- miR-486-3p suppressed DDR1 expression by targeting its 3'-UTR, inhibiting cell growth and inducing apoptosis.
- Aberrant DNA methylation of the ANK1 promoter epigenetically silenced ANK1 and miR-486-3p in OSCC.
- Arecoline promoted ANK1 promoter methylation via DNMT3B, leading to decreased miR-486-3p expression.
Conclusions:
- This study elucidates a novel regulatory pathway involving miR-486-3p and DDR1 in OSCC, influenced by betel nut components.
- Arecoline-induced epigenetic silencing of miR-486-3p, mediated by DNMT3B, contributes to oral carcinogenesis.
- miR-486-3p and DDR1 represent potential therapeutic targets for oral cancer treatment.
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