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A novel lncRNA NR4A1AS up-regulates orphan nuclear receptor NR4A1 expression by blocking UPF1-mediated mRNA
Xina Xie1,2, Jiatian Lin3, Jianlan Liu4
1Guangdong Key Laboratory of Systems Biology and Synthetic Biology for Urogenital Tumors, Institute of Translational Medicine, First Affiliated Hospital of Shenzhen University, Shenzhen Second People's Hospital, Shenzhen 518035, China.
Abstract:
Long non-coding RNAs (lncRNAs) play important roles in tumorigenesis and cancer progression. The orphan nuclear receptor subfamily 4 group A member 1 (NR4A1) acts as an oncogene, and is involved in colorectal cancer (CRC) development. However, the mechanism through which lncRNA regulates NR4A1 expression remains unknown. We aimed to identify lncRNAs that regulate NR4A1 and assess their underlying mechanisms in CRC. We first identified an antisense lncRNA of NR4A1 that was up-regulated in CRC tissues and cells with rapid amplification of cDNA ends (RACE), and designated it as NR4A1AS. Spearman correlation analysis showed that NR4A1AS was positively correlated with NR4A1 mRNA levels in 37 CRC tissues. Mechanistically, NR4A1AS stabilized NR4A1 mRNA by forming RNA-RNA complexes via partial base-pairing and up-regulated NR4A1 expression in CRC cells. RNA immunoprecipitation (RIP) assays revealed that knockdown of NR4A1AS expression by siRNA enhanced up-frameshift 1 (UPF1) recruitment to NR4A1 mRNA, thereby decreasing NR4A1 mRNA stability. Moreover, depletion of NR4A1AS was found to mimic the effect of NR4A1 knockdown, specifically by suppressing cell proliferation, migration and invasion, and inducing apoptosis and cell cycle arrest. Accordingly, restoring NR4A1 expression ameliorated the effects of NR4A1AS knockdown on tumor growth and metastasis of CRC cells in vitro and in vivo Thus, we conclude that NR4A1AS up-regulates NR4A1 expression by forming RNA-RNA complexes and blocking UPF1-mediated mRNA destabilization, and it functions in tumor growth and metastasis of CRC cells at least partly through regulating NR4A1, suggesting that NR4A1AS might be as a potential target for RNA-based anti-CRC drug studies.
Insights
A novel long non-coding RNA, NR4A1AS, promotes colorectal cancer (CRC) by stabilizing NR4A1 mRNA, inhibiting UPF1-mediated decay. NR4A1AS inhibition suppressed tumor growth and metastasis, suggesting its potential as an anti-CRC therapeutic target.
Area of Science:
- Molecular Biology
- Cancer Research
- RNA Biology
Background:
- Long non-coding RNAs (lncRNAs) are implicated in cancer development.
- Nuclear receptor subfamily 4 group A member 1 (NR4A1) is an oncogene in colorectal cancer (CRC).
- The regulatory mechanisms of NR4A1 by lncRNAs in CRC are not well understood.
Purpose of the Study:
- To identify lncRNAs regulating NR4A1 expression in CRC.
- To elucidate the molecular mechanisms underlying NR4A1 regulation by lncRNAs in CRC.
- To evaluate the therapeutic potential of NR4A1AS in CRC.
Main Methods:
- Identification of NR4A1 antisense lncRNA (NR4A1AS) using RACE.
- Correlation analysis of NR4A1AS and NR4A1 mRNA levels in CRC tissues.
- Assessment of NR4A1AS function via siRNA knockdown, RNA immunoprecipitation (RIP), and in vitro/in vivo assays.
Main Results:
- NR4A1AS was identified as an antisense lncRNA upregulated in CRC and positively correlated with NR4A1 mRNA.
- NR4A1AS stabilizes NR4A1 mRNA by forming RNA-RNA complexes, upregulating NR4A1 expression and inhibiting UPF1-mediated decay.
- NR4A1AS depletion suppressed CRC cell proliferation, migration, invasion, and induced apoptosis and cell cycle arrest, mimicking NR4A1 knockdown.
Conclusions:
- NR4A1AS promotes CRC progression by stabilizing NR4A1 mRNA and blocking UPF1-mediated decay.
- NR4A1AS regulates CRC cell growth, metastasis, apoptosis, and cell cycle via NR4A1.
- NR4A1AS represents a potential therapeutic target for RNA-based anti-CRC drug development.
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