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Impact of IFNL4 Genetic Variants on Sustained Virologic Response and Viremia in Hepatitis C Virus Genotype 3 Patients
Vincent Pedergnana1,2, William L Irving3, Eleanor Barnes4
1Wellcome Centre Human Genetics, University of Oxford, Oxford, United Kingdom.
Insights
Genetic variants in the IFNL4 gene significantly impact Hepatitis C virus (HCV) genotype 3 outcomes. This study found these variants influence treatment response to interferon (IFN) and direct-acting antiviral (DAA) therapies and viral load.
Area of Science:
- Genetics
- Virology
- Immunology
Background:
- Hepatitis C virus (HCV) genotype 3 is common in Europe and Asia, linked to poorer outcomes.
- Genetic factors are implicated in HCV infection, but genome-wide studies are lacking for genotype 3.
- Understanding genetic influences can optimize treatment strategies.
Purpose of the Study:
- To investigate the role of genetic variants in HCV genotype 3 patients.
- To analyze associations with response to interferon (IFN) and direct-acting antiviral (DAA) regimens.
- To explore the impact on viral load (viremia).
Main Methods:
- A large cohort of 1,759 HCV genotype 3 patients was studied.
- Combined candidate gene and genome-wide association analyses were performed.
- The functional dinucleotide polymorphism rs368234815 in the IFNL4 locus was specifically examined.
Main Results:
- Genetic variants in the IFNL4 gene were major factors associated with treatment response and viremia.
- rs368234815 showed significant association with IFN-based sustained virologic response (SVR).
- This variant also impacted viremia and direct-acting antiviral (DAA)-based SVR.
Conclusions:
- Genetic variants, particularly at the IFNL4 locus, play a role in HCV genotype 3 viremia.
- These genetic factors influence both IFN-based and direct-acting antiviral (DAA)-based treatment outcomes.
- Findings highlight the importance of host genetics in managing HCV genotype 3 infections.
Abstract:
Hepatitis C virus (HCV) genotype 3 is very prevalent in Europe and Asia and is associated with worst outcomes than other genotypes. Genetic factors have been associated with HCV infection; however, no extensive genome-wide study has been performed among HCV genotype 3 patients. In this study, using a large cohort of 1,759 patients infected with HCV genotype 3, we explore the role of genetic variants on the response to interferon (IFN) and direct-acting antiviral (DAA) regimens and viremia in a combined candidate gene and genome-wide analysis. We show that genetic variants within the IFN lambda 4 (IFNL4) locus are the major factors associated with the studied traits, accordingly with observations in other HCV genotypes and with comparable effect sizes. In particular, the functional dinucleotide polymorphism rs368234815 was associated with IFN-based sustained virologic response (SVR) [odds ratio (OR) = 1.5, P = 2.3 × 10-7], viremia (beta = -0.23, P = 8.8 × 10-10), and also DAA-based SVR (OR = 1.7; P = 4.2 × 10-4). Our results provide evidence for a role of genetic variants on HCV viremia and SVR, notably DAA-based, in patients infected with HCV genotype 3.
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