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Updated: Jan 22, 2026

Peptide-based Identification of Functional Motifs and their Binding Partners
Published on: June 30, 2013
Structure and Function Characterization of the a1a2 Motifs of Streptococcus pyogenes M Protein in Human Plasminogen
Adam J H Quek1, Blake A Mazzitelli1, Guojie Wu1
1ARC Centre of Excellence in Advanced Molecular Imaging, Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia.
Abstract:
Plasminogen (Plg)-binding M protein (PAM) is a group A streptococcal cell surface receptor that is crucial for bacterial virulence. Previous studies revealed that, by binding to the kringle 2 (KR2) domain of host Plg, the pathogen attains a proteolytic microenvironment on the cell surface that facilitates its dissemination from the primary infection site. Each of the PAM molecules in their dimeric assembly consists of two Plg binding motifs (called the a1 and a2 repeats). To date, the molecular interactions between the a1 repeat and KR2 have been structurally characterized, whereas the role of the a2 repeat is less well defined. Here, we report the 1.7-Å x-ray crystal structure of KR2 in complex with a monomeric PAM peptide that contains both the a1 and a2 motifs. The structure reveals how the PAM peptide forms key interactions simultaneously with two KR2 via the high-affinity lysine isosteres within the a1a2 motifs. Further studies, through combined mutagenesis and functional characterization, show that a2 is a stronger KR2 binder than a1, suggesting that these two motifs may play discrete roles in mediating the final PAM-Plg assembly.
Insights
Group A Streptococcus uses Plasminogen (Plg)-binding M protein (PAM) to spread. This study reveals how PAM
Area of Science:
- Microbiology
- Structural Biology
- Biochemistry
Background:
- Group A Streptococcus (GAS) utilizes Plasminogen (Plg)-binding M protein (PAM) as a cell surface receptor crucial for virulence.
- PAM binding to the Plg kringle 2 (KR2) domain creates a localized proteolytic environment, aiding bacterial dissemination.
- PAM features two Plg-binding motifs (a1 and a2 repeats) in its dimeric form, with the a2 repeat's role being less understood.
Purpose of the Study:
- To elucidate the structural basis of the interaction between the a1 and a2 repeats of PAM and the KR2 domain of Plg.
- To investigate the distinct roles and binding affinities of the a1 and a2 motifs in PAM-Plg complex formation.
Main Methods:
- X-ray crystallography was employed to determine the 1.7-Å structure of KR2 in complex with a monomeric PAM peptide containing both a1 and a2 motifs.
- Site-directed mutagenesis and functional assays were utilized to characterize the binding interactions and affinities of the a1 and a2 repeats.
Main Results:
- The crystal structure revealed simultaneous interactions between the PAM peptide (a1a2 motifs) and two KR2 domains, mediated by lysine isosteres.
- Mutagenesis and functional studies demonstrated that the a2 repeat exhibits a higher binding affinity for KR2 compared to the a1 repeat.
- These findings suggest that the a1 and a2 motifs may have specialized functions in the assembly of the PAM-Plg complex.
Conclusions:
- The a2 repeat of PAM is a stronger binder to Plg's KR2 domain than the a1 repeat.
- The distinct binding affinities of a1 and a2 motifs suggest they play complementary roles in mediating the overall PAM-Plg interaction.
- Understanding these molecular interactions provides insights into GAS virulence mechanisms and potential therapeutic targets.
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