Related Experiment Video
Updated: Jan 22, 2026

Structure of HIV-1 Capsid Assemblies by Cryo-electron Microscopy and Iterative Helical Real-space Reconstruction
Published on: August 9, 2011
BAY 41-4109-mediated aggregation of assembled and misassembled HBV capsids in cells revealed by electron microscopy
Virgile Rat1, Florian Seigneuret1, Julien Burlaud-Gaillard2
1Morphogenèse et Antigénicité Du VIH et des Virus des Hépatites, Inserm - U1259 MAVIVH, Université de Tours et CHRU de Tours, 10 Boulevard Tonnellé - BP 3223, 37032, Tours Cedex 1, France.
Insights
The Hepatitis B virus (HBV) core protein (HBc) aggregates in liver cells when treated with BAY 41-4109. This drug candidate causes nuclear envelope deformation and forms capsid-like shells, offering insights into HBV antiviral strategies.
Area of Science:
- Hepatology
- Virology
- Structural Biology
Background:
- The Hepatitis B virus (HBV) core protein (HBc) is crucial for forming the HBV capsid.
- HBc's diverse roles in viral replication present it as a key target for antiviral drug development.
- Previous research identified HBV assembly inhibitors, or capsid assembly modulators, based on HBc structure.
Purpose of the Study:
- To investigate the effects of BAY 41-4109, a heteroaryldihydropyrimidine derivative, on HBc aggregation and HBV capsid formation.
- To elucidate the ultrastructural organization of HBc aggregates induced by BAY 41-4109.
- To understand the mechanism of action of BAY 41-4109 as an HBV antiviral agent.
Main Methods:
- Confocal microscopy to observe BAY 41-4109-mediated HBc aggregation in Huh7 cells.
- Image analysis to quantify aggregate size in relation to drug concentration and treatment duration.
- Transmission electron microscopy (TEM) and immuno-TEM to examine the ultrastructure of HBc aggregates and their interaction with the nuclear envelope.
Main Results:
- BAY 41-4109 induced HBc aggregation, primarily in the cytoplasm of Huh7 cells.
- Aggregate size was dose- and time-dependent.
- Large aggregates were associated with nuclear envelope invaginations, confirmed by TEM.
- TEM and immuno-TEM revealed aggregates composed of capsid-like shells containing HBV core fragments.
Conclusions:
- BAY 41-4109 promotes the formation of non-capsid HBc polymers.
- The drug induces significant ultrastructural changes, including nuclear envelope deformation.
- These findings provide insights into the mechanism of action of BAY 41-4109 and serve as a reference for other HBV capsid assembly inhibitors.
Abstract:
HBc is a small protein essential for the formation of the icosahedral HBV capsid. Its multiple roles in the replication cycle make this protein a promising target for the development of antiviral molecules. Based on the structure of HBc, a series of HBV assembly inhibitors, also known as capsid assembly modulators, were identified. We investigated the effect of BAY 41-4109, a heteroaryldihydropyrimidine derivative that promotes the assembly of a non-capsid polymer. We showed, by confocal microscopy, that BAY 41-4109 mediated HBc aggregation, mostly in the cytoplasm of Huh7 cells. Image analysis revealed that aggregate size depended on BAY 41-4109 concentration and treatment duration. Large aggregates in the vicinity of the nucleus were enclosed by invaginations of the nuclear envelope. This deformation of the nuclear envelope was confirmed by transmission electron microscopy (TEM) and immuno-TEM. These two techniques also revealed that the HBc aggregates were accumulations of capsid-like shells with an electron-dense material consisting of HBV core fragments. These findings, shedding light on the ultrastructural organization of HBc aggregates, provide insight into the mechanisms of action of BAY 41-4109 against HBV and will serve as a basis for comparison with other HBV capsid assembly inhibitors.
Related Concept Videos
Overview of Electron Microscopy
Scanning Electron Microscopy
Fundamental Principles
Accelerated...
Transmission Electron Microscopy
Immunogold Electron Microscopy
Cryo-electron Microscopy
Preparation of Samples for Electron Microscopy

