Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Genome Annotation and Assembly03:36

Genome Annotation and Assembly

20.6K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
20.6K
Crossing Over01:34

Crossing Over

169.5K
Unlike mitosis, meiosis aims for genetic diversity in its creation of haploid gametes. Dividing germ cells first begin this process in prophase I, where each chromosome—replicated in S phase—is now composed of two sister chromatids (identical copies) joined centrally.
The homologous pairs of sister chromosomes—one from the maternal and one from the paternal genome—then begin to align alongside each other lengthwise, matching corresponding DNA positions in a process...
169.5K
Crossing Over01:30

Crossing Over

6.3K
Crossing over is the exchange of genetic information between homologous chromosomes during prophase I of meiosis I. Genetic recombination gives rise to allelic diversity in the newly formed daughter cells. In humans, crossing over produces genetically distinct haploid egg and sperm cells that undergo fertilization to produce unique offspring. Before cell division starts, the germ cell’s chromosome(s) undergo duplication in the S phase of the cell cycle. As the cells enter prophase I,...
6.3K
Monohybrid Crosses01:20

Monohybrid Crosses

238.8K
Overview
238.8K
Cross-Sectional Research01:50

Cross-Sectional Research

12.4K
In cross-sectional research, a researcher compares multiple segments of the population at the same time. If they were interested in people's dietary habits, the researcher might directly compare different groups of people by age. Instead of following a group of people for 20 years to see how their dietary habits changed from decade to decade, the researcher would study a group of 20-year-old individuals and compare them to a group of 30-year-old individuals and a group of 40-year-old...
12.4K
Machines01:19

Machines

559
Machines are complex structures consisting of movable, pin-connected multi-force members that work together to transmit forces. One example of a machine is the cutting plier, which is used to cut wires by applying forces to its handles. When equal and opposite forces are exerted on the handles of the cutting plier, they cause the cutting edges to come together and apply equal and opposite reaction forces on the wire, which are greater than the applied forces.
A free-body diagram of the...
559

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Resources for screening the literature for glycan-related terms using PubAnnotation in GlyCosmos.

Glycobiology·2026
Same author

A curation system of rice trait ontology with reliable interoperation by LLM and PubAnnotation.

Genomics & informatics·2025
Same author

Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features.

Journal of biomedical semantics·2025
Same author

Opportunities and Pitfalls with Large Language Models for Biomedical Annotation.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing·2024
Same author

Customizing GPT for natural language dialogue interface in database access.

Genomics & informatics·2024
Same author

Galaxy Helm chart: a standardized method for deploying production Galaxy servers.

Bioinformatics (Oxford, England)·2024

Related Experiment Video

Updated: Jan 22, 2026

A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic Data
09:34

A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic Data

Published on: September 25, 2021

4.5K

Towards cross-platform interoperability for machine-assisted text annotation.

Richard Eckart de Castilho1, Nancy Ide2, Jin-Dong Kim3

  • 1UKP Lab, Technical University Darmstadt, 64289 Darmstadt, Germany.

Genomics & Informatics
|July 16, 2019
PubMed
Summary
This summary is machine-generated.

Investigating cross-platform interoperability in natural language processing (NLP) and text annotation reveals key design elements impacting seamless communication. Understanding these factors is crucial for effective human-in-the-loop annotation systems.

Keywords:
annotation softwarebiomedical text mininginteroperability

More Related Videos

An Experimental Platform to Study the Closed-loop Performance of Brain-machine Interfaces
10:51

An Experimental Platform to Study the Closed-loop Performance of Brain-machine Interfaces

Published on: March 10, 2011

14.2K
Asthma Detection Research Based on Voice Signal Processing and Machine Learning
04:04

Asthma Detection Research Based on Voice Signal Processing and Machine Learning

Published on: July 22, 2025

943

Related Experiment Videos

Last Updated: Jan 22, 2026

A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic Data
09:34

A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic Data

Published on: September 25, 2021

4.5K
An Experimental Platform to Study the Closed-loop Performance of Brain-machine Interfaces
10:51

An Experimental Platform to Study the Closed-loop Performance of Brain-machine Interfaces

Published on: March 10, 2011

14.2K
Asthma Detection Research Based on Voice Signal Processing and Machine Learning
04:04

Asthma Detection Research Based on Voice Signal Processing and Machine Learning

Published on: July 22, 2025

943

Area of Science:

  • Natural Language Processing (NLP)
  • Computational Linguistics
  • Human-Computer Interaction

Background:

  • Cross-platform interoperability is essential for modern Natural Language Processing (NLP) workflows.
  • Machine-assisted interactive annotation (human-in-the-loop) requires flexible resource integration and advanced annotation tools.
  • Existing platforms often use disparate annotation models, hindering seamless communication.

Purpose of the Study:

  • To identify design elements in NLP annotation models and processes that affect cross-platform interoperability.
  • To evaluate factors enabling or hindering seamless communication across different annotation platforms.
  • To inform the development of more integrated and efficient NLP annotation systems.

Main Methods:

  • Comparative analysis of three independently developed annotation platforms.
  • Examination of different annotation representation models across platforms.
  • Focus on machine-assisted interactive annotation methodologies.

Main Results:

  • Specific design choices in annotation models present challenges for interoperability.
  • Certain platform features facilitate easier integration of diverse NLP resources and tools.
  • The study highlights the impact of annotation representation on cross-platform data exchange.

Conclusions:

  • Addressing problematic design elements is key to achieving seamless cross-platform NLP annotation.
  • Standardization or flexible adaptation of annotation models can improve interoperability.
  • Future NLP systems should prioritize design for easier integration and communication between diverse tools and resources.