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Whole-Genome Sequencing Reveals a Prolonged and Persistent Intrahospital Transmission of Corynebacterium striatum, an
Xuebing Wang1, Haijian Zhou1, Dongke Chen2
1State Key Laboratory of Infectious Disease Prevention and Control, Chinese Center for Disease Control and Prevention, National Institute for Communicable Disease Control and Prevention, Changping, Beijing, China.
Abstract:
Corynebacterium striatum is an emerging multidrug-resistant (MDR) pathogen that occurs primarily among immunocompromised and chronically ill patients. However, little is known about the genomic diversity of C. striatum, which contributes to its long-term persistence and transmission in hospitals. In this study, a total of 192 C. striatum isolates obtained from 14 September 2017 to 29 March 2018 in a hospital in Beijing, China, were analyzed by antimicrobial susceptibility testing and pulsed-field gel electrophoresis (PFGE). Whole-genome sequencing was conducted on 91 isolates. Nearly all isolates (96.3%, 183/190) were MDR. The highest resistance rate was observed for ciprofloxacin (99.0%, 190/192), followed by cefotaxime (90.6%, 174/192) and erythromycin (89.1%, 171/192). PFGE separated the 192 isolates into 79 pulsotypes, and differences in core genome single-nucleotide polymorphisms (SNPs) partitioned the 91 isolates sequenced into four clades. Isolates of the same pulsotype were identical or nearly identical at the genome level, with some exceptions. Two dominant subclones, clade 3a, and clade 4a, were responsible for the hospital-wide dissemination. Genomic analysis further revealed nine resistance genes mobilized by eight unique cassettes. PFGE and whole-genome sequencing revealed that the C. striatum isolates studied were the result mainly of predominant clones spreading in the hospital. C. striatum isolates in the hospital progressively acquired resistance to antimicrobial agents, demonstrating that isolates of C. striatum may adapt rapidly through the acquisition and accumulation of resistance genes and thus evolve into dominant and persistent clones. These insights will be useful for the prevention of C. striatum infection in hospitals.
Insights
Genomic analysis of Corynebacterium striatum reveals dominant clones driving hospital-wide multidrug resistance. Understanding this genomic diversity is key to preventing persistent infections in healthcare settings.
Area of Science:
- Medical Microbiology
- Genomics
- Infectious Diseases
Background:
- Corynebacterium striatum is an emerging multidrug-resistant (MDR) pathogen.
- Its genomic diversity and role in hospital persistence are poorly understood.
Purpose of the Study:
- To investigate the genomic diversity of C. striatum isolates in a Beijing hospital.
- To identify the genetic basis of multidrug resistance and hospital-wide dissemination.
Main Methods:
- Antimicrobial susceptibility testing
- Pulsed-field gel electrophoresis (PFGE)
- Whole-genome sequencing (WGS)
Main Results:
- Nearly all isolates (96.3%) were multidrug-resistant.
- High resistance rates observed for ciprofloxacin, cefotaxime, and erythromycin.
- PFGE and WGS identified dominant clones (clades 3a and 4a) responsible for dissemination.
- Nine resistance genes mobilized by eight unique cassettes were identified.
Conclusions:
- C. striatum isolates in the hospital are primarily driven by predominant, spreading clones.
- Rapid adaptation through resistance gene acquisition leads to dominant and persistent clones.
- Genomic insights are crucial for preventing C. striatum hospital infections.
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