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Updated: Jan 22, 2026

Crystallizing Membrane Proteins for Structure Determination using Lipidic Mesophases
Published on: November 21, 2010
Inactivating mutations and X-ray crystal structure of the tumor suppressor OPCML reveal cancer-associated functions
James R Birtley1,2, Mohammad Alomary3, Elisa Zanini3
1Department of Pathology, University of Massachusetts Medical School, Worcester, MA, 01655, USA.
Abstract:
OPCML, a tumor suppressor gene, is frequently silenced epigenetically in ovarian and other cancers. Here we report, by analysis of databases of tumor sequences, the observation of OPCML somatic missense mutations from various tumor types and the impact of these mutations on OPCML function, by solving the X-ray crystal structure of this glycoprotein to 2.65 Å resolution. OPCML consists of an extended arrangement of three immunoglobulin-like domains and homodimerizes via a network of contacts between membrane-distal domains. We report the generation of a panel of OPCML variants with representative clinical mutations and demonstrate clear phenotypic effects in vitro and in vivo including changes to anchorage-independent growth, interaction with activated cognate receptor tyrosine kinases, cellular migration, invasion in vitro and tumor growth in vivo. Our results suggest that clinically occurring somatic missense mutations in OPCML have the potential to contribute to tumorigenesis in a variety of cancers.
Insights
The tumor suppressor gene OPCML, often silenced in cancers, can also acquire mutations. These OPCML mutations impact its structure and function, potentially driving tumor development in various cancers.
Area of Science:
- Oncology
- Molecular Biology
- Structural Biology
Background:
- The OPCML gene, a known tumor suppressor, is frequently epigenetically silenced in ovarian and other cancers.
- Somatic mutations in OPCML have been observed, but their functional impact remains largely unexplored.
Purpose of the Study:
- To investigate the occurrence and functional consequences of somatic missense mutations in the OPCML gene.
- To elucidate the structural basis of OPCML function and how mutations affect it.
Main Methods:
- Analysis of tumor sequence databases to identify OPCML mutations.
- X-ray crystallography to determine the 3D structure of OPCML.
- Generation and in vitro/in vivo characterization of OPCML variants with clinical mutations.
Main Results:
- Identified somatic missense mutations in OPCML across various tumor types.
- Determined the X-ray crystal structure of OPCML, revealing its domain arrangement and homodimerization.
- Demonstrated that OPCML mutations alter anchorage-independent growth, receptor tyrosine kinase interactions, cell migration, invasion, and tumor growth.
Conclusions:
- Clinically observed somatic missense mutations in OPCML can significantly impact its tumor suppressor function.
- These mutations contribute to tumorigenesis by altering critical cellular processes.
- OPCML mutations represent a potential mechanism in the development of diverse cancers.
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