PCR-based zebrafish model for personalised medicine in head and neck cancer

Ahmed Al-Samadi1, Katja Tuomainen2, Anne Kivimäki2

  • 1Department of Oral and Maxillofacial Diseases, Clinicum, Faculty of Medicine, University of Helsinki, Biomedicum Helsinki 1, C223b (Haartmaninkatu 8), P.O. Box 63, 00014, Helsinki, Finland. ahmed.al-samadi@helsinki.fi.

Abstract

Insights

A new PCR-based assay offers a faster, cost-effective method for personalized cancer drug testing in zebrafish larvae xenografts. This approach accurately assesses drug efficacy in both cell lines and patient tumors, improving upon traditional imaging techniques.

Area of Science:

  • Oncology
  • Zebrafish Models
  • Molecular Biology

Background:

  • In vivo personalized cancer drug testing remains challenging.
  • Zebrafish larvae xenografts show promise for drug testing against patient-derived tumors.
  • Current imaging methods for drug efficacy assessment in xenografts have limitations, including time constraints.

Purpose of the Study:

  • To develop a novel, rapid, and cost-effective PCR-based assay for evaluating anti-cancer drug efficacy.
  • To compare the efficacy of the PCR-based assay with traditional imaging techniques in a zebrafish larvae xenograft model.
  • To screen multiple compounds for anti-cancer activity using the developed assay.

Main Methods:

  • Established a zebrafish larvae xenograft model using head and neck squamous cell carcinoma (HNSCC) cell lines and a patient-derived tumor sample.
  • Evaluated cisplatin efficacy using both imaging and PCR-based methods (quantitative PCR and droplet digital PCR).
  • Performed drug screening of eight compounds on HNSCC cell lines and patient samples via PCR.

Main Results:

  • PCR-based methods (qPCR and ddPCR) demonstrated comparable results to imaging in assessing cisplatin's reduction of cancer cell growth.
  • The quantitative PCR assay confirmed a dose-dependent response of HNSCC cells to cisplatin.
  • Drug screening revealed varying efficacies of tested compounds across different HNSCC cell lines and the patient sample.

Conclusions:

  • Introduced a novel, efficient, and economical PCR-based assay for in vivo drug response evaluation in zebrafish larvae.
  • The assay is suitable for testing both cancer cell lines and clinical tumor samples.
  • This PCR method complements existing imaging techniques for enhanced drug efficacy assessment.

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