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Drugging an undruggable pocket on KRAS
Dirk Kessler1, Michael Gmachl1, Andreas Mantoulidis1
1Discovery Research, Boehringer Ingelheim Regional Center Vienna GmbH & Co KG, 1120 Vienna, Austria.
Abstract:
The 3 human RAS genes, KRAS, NRAS, and HRAS, encode 4 different RAS proteins which belong to the protein family of small GTPases that function as binary molecular switches involved in cell signaling. Activating mutations in RAS are among the most common oncogenic drivers in human cancers, with KRAS being the most frequently mutated oncogene. Although KRAS is an excellent drug discovery target for many cancers, and despite decades of research, no therapeutic agent directly targeting RAS has been clinically approved. Using structure-based drug design, we have discovered BI-2852 (1), a KRAS inhibitor that binds with nanomolar affinity to a pocket, thus far perceived to be "undruggable," between switch I and II on RAS; 1 is mechanistically distinct from covalent KRASG12C inhibitors because it binds to a different pocket present in both the active and inactive forms of KRAS. In doing so, it blocks all GEF, GAP, and effector interactions with KRAS, leading to inhibition of downstream signaling and an antiproliferative effect in the low micromolar range in KRAS mutant cells. These findings clearly demonstrate that this so-called switch I/II pocket is indeed druggable and provide the scientific community with a chemical probe that simultaneously targets the active and inactive forms of KRAS.
Insights
Researchers discovered BI-2852, a novel KRAS inhibitor targeting an "undruggable" pocket. This breakthrough offers a new therapeutic strategy for KRAS-mutant cancers by blocking both active and inactive RAS forms.
Area of Science:
- Oncology
- Molecular Biology
- Drug Discovery
Background:
- RAS proteins (KRAS, NRAS, HRAS) are small GTPases crucial for cell signaling.
- Activating RAS mutations are common oncogenic drivers in human cancers, particularly KRAS.
- Despite KRAS being a key drug target, no direct RAS-targeting therapeutics are approved.
Purpose of the Study:
- To discover and characterize novel inhibitors targeting the KRAS protein.
- To validate the druggability of the switch I/II pocket in KRAS.
- To develop a chemical probe for targeting both active and inactive forms of KRAS.
Main Methods:
- Structure-based drug design was employed to identify BI-2852.
- BI-2852's binding affinity and mechanism of action were assessed.
- Antiproliferative effects were evaluated in KRAS-mutant cancer cells.
Main Results:
- BI-2852 (1) demonstrated nanomolar binding affinity to a previously inaccessible switch I/II pocket on RAS.
- The inhibitor is mechanistically distinct from covalent KRASG12C inhibitors, targeting both active and inactive RAS forms.
- BI-2852 inhibited downstream signaling and exhibited antiproliferative effects in KRAS-mutant cells.
Conclusions:
- The switch I/II pocket on RAS is druggable.
- BI-2852 represents a novel chemical probe for targeting both active and inactive RAS.
- This discovery opens new avenues for therapeutic development against KRAS-driven cancers.
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