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MMRdb: Measles, mumps, and rubella viruses database and analysis resource
Iman Almansour1, Mazen Alhagri2
1Epidemic Diseases Department, Institute for Research and Medical Consultations, Imam Abdulrahman Bin Faisal University, Dammam 31441, Saudi Arabia.
Abstract:
Measles, mumps, and rubella viruses are well known human pathogens that cause mild to severe illnesses. Despite the existence of MMR vaccines since 1971, outbreaks have been largely documented even in highly vaccinated populations. There is a pressing need to develop a resource to monitor genetic and antigenic variations among these viruses. Here, we introduced MMRdb, a web central database and analysis resource for measles, mumps, and rubella viruses. Users can search viruses at gene level and obtain sequence information based on gene product, geographic location, year, or host. The MMRdb also catalogs experimentally verified B cells and T cells antigenic epitopes data. A set of computation tools such as multiple sequence alignment, Geo Chart, and sequence similarity BLAST search has been implemented in a user-friendly database. The main features of this database will assist researchers in monitoring genetics and antigenic variations, tracking geographic spread with regards of sequence information, and facilitate the development of diagnostics, vaccines, and immunotherapeutics. Database URL: http://mmrdb.org.
Insights
Measles, mumps, and rubella viruses (MMR) can cause illness despite vaccination. A new database, MMRdb, tracks genetic and antigenic variations to aid in developing better diagnostics and vaccines.
Area of Science:
- Virology
- Immunology
- Bioinformatics
Background:
- Measles, mumps, and rubella viruses are significant human pathogens.
- Outbreaks occur even in highly vaccinated populations, highlighting the need for continuous monitoring.
- Existing resources may not adequately address the genetic and antigenic variations of these viruses.
Purpose of the Study:
- To introduce MMRdb, a centralized web database and analysis resource for measles, mumps, and rubella viruses.
- To provide researchers with tools to monitor viral genetic and antigenic diversity.
- To facilitate the development of improved diagnostics, vaccines, and immunotherapeutics.
Main Methods:
- Development of a user-friendly web database (MMRdb).
- Integration of search functionalities for viral sequence information (gene level, geographic location, year, host).
- Inclusion of experimentally verified B cell and T cell antigenic epitopes.
- Implementation of computational tools: multiple sequence alignment, Geo Chart, and BLAST search.
Main Results:
- MMRdb provides comprehensive sequence data for measles, mumps, and rubella viruses.
- The database includes experimentally validated antigenic epitopes.
- Integrated bioinformatics tools enable detailed sequence analysis and comparison.
Conclusions:
- MMRdb serves as a valuable resource for tracking genetic and antigenic variations of MMR viruses.
- The database supports monitoring viral geographic spread and evolution.
- MMRdb will aid researchers in developing next-generation diagnostics and vaccines against measles, mumps, and rubella.
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