Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Distribution Reliability and Automation01:25

Distribution Reliability and Automation

498
Distribution reliability in electrical power systems is critical for ensuring an uninterrupted power supply to consumers at minimal cost. According to IEEE Standard Terms, reliability is the probability that a device will function without failure over a specified time period or amount of usage. For electric power distribution, this translates to maintaining continuous power supply and addressing customer concerns over power outages. Several indices, as defined by IEEE Standard 1366-2012, are...
498
Overview of Microsoft Excel as a Data Analysis Tool01:13

Overview of Microsoft Excel as a Data Analysis Tool

1.5K
Microsoft Excel is a cornerstone tool for data analysis and statistical operations, offering a wide array of functionalities to manage, analyze, and visualize data efficiently. Recognized for its versatility, Excel facilitates the performance of basic to complex statistical operations, serving as an indispensable asset for analysts, researchers, and students alike. Excel's significance in data analysis emanates from its spreadsheet environment, where data can be organized in rows and...
1.5K
What is Evolutionary History?02:35

What is Evolutionary History?

42.9K
Scientists record evolutionary history by analyzing fossil, morphological, and genetic data. The fossil record documents the history of life on Earth and provides evidence for evolution. However, both fossil and living organisms offer evidence that outlines Earth’s evolutionary history.
42.9K
CRISPR01:59

CRISPR

57.6K
Genome editing technologies allow scientists to modify an organism’s DNA via the addition, removal, or rearrangement of genetic material at specific genomic locations. These types of techniques could potentially be used to cure genetic disorders such as hemophilia and sickle cell anemia. One popular and widely used DNA-editing research tool that could lead to safe and effective cures for genetic disorders is the CRISPR-Cas9 system. CRISPR-Cas9 stands for Clustered Regularly Interspaced...
57.6K
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

8.0K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
8.0K
Measurement: Derived Units03:02

Measurement: Derived Units

54.2K
The International System of Units or SI system, by international agreement, has fixed measurement units for seven fundamental properties: length, mass, time, temperature, electric current, amount of substance, and luminosity. These are called the SI base units.
54.2K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

A pragmatist approach to bridging tables and ontologies through LinkML and punning.

Journal of biomedical semantics·2026
Same author

VO: The Vaccine Ontology.

Scientific data·2026
Same author

The Cell Ontology in the age of single-cell omics.

Scientific data·2026
Same author

OpenScientist: evaluating an open agentic AI co-scientist to accelerate biomedical discovery.

medRxiv : the preprint server for health sciences·2026
Same author

Systematic benchmarking demonstrates large language models have not reached the diagnostic accuracy of traditional rare-disease decision support tools.

European journal of human genetics : EJHG·2026
Same author

A custom phenotypic profile for Fanconi anemia: Addressing gaps in existing disease annotations.

medRxiv : the preprint server for health sciences·2026
Same journal

OpenIMC: an open-source platform for analyzing single-cell and spatial proteomics by imaging mass cytometry.

BMC bioinformatics·2026
Same journal

NAP: an open source pipeline for cross-domain microbiome profiling using Nanopore sequencing-derived amplicon data.

BMC bioinformatics·2026
Same journal

SurvGME: an R package for survival analysis with graphical and measurement error models.

BMC bioinformatics·2026
Same journal

SimMapNet: a Bayesian framework for gene regulatory network inference using gene ontology similarities as external hint.

BMC bioinformatics·2026
Same journal

Dual channel drug-drug interactions extraction based on cross attention.

BMC bioinformatics·2026
Same journal

FeSseqdb: a curated sequence-level database and interpretable machine learning framework for identifying iron-sulfur proteins.

BMC bioinformatics·2026
See all related articles

Related Experiment Video

Updated: Jan 21, 2026

Automated Robotic Liquid Handling Assembly of Modular DNA Devices
11:22

Automated Robotic Liquid Handling Assembly of Modular DNA Devices

Published on: December 1, 2017

12.9K

ROBOT: A Tool for Automating Ontology Workflows.

Rebecca C Jackson1, James P Balhoff2, Eric Douglass3

  • 1Knocean Inc., Toronto, Ontario, Canada. rbca.jackson@gmail.com.

BMC Bioinformatics
|July 31, 2019
PubMed
Summary
This summary is machine-generated.

ROBOT is an open-source tool that automates ontology development tasks for the life sciences. It streamlines the creation, maintenance, and release of high-quality ontologies, ensuring adherence to standards and reducing errors.

Keywords:
AutomationImport managementOntology developmentOntology releaseQuality controlReasoningWorkflows

More Related Videos

Shotgun Proteomics Sample Processing Automated by an Open-Source Lab Robot
10:12

Shotgun Proteomics Sample Processing Automated by an Open-Source Lab Robot

Published on: October 28, 2021

4.2K
Human Mesenchymal Stem Cell Processing for Clinical Applications Using a Closed Semi-Automated Workflow
09:03

Human Mesenchymal Stem Cell Processing for Clinical Applications Using a Closed Semi-Automated Workflow

Published on: March 17, 2023

2.6K

Related Experiment Videos

Last Updated: Jan 21, 2026

Automated Robotic Liquid Handling Assembly of Modular DNA Devices
11:22

Automated Robotic Liquid Handling Assembly of Modular DNA Devices

Published on: December 1, 2017

12.9K
Shotgun Proteomics Sample Processing Automated by an Open-Source Lab Robot
10:12

Shotgun Proteomics Sample Processing Automated by an Open-Source Lab Robot

Published on: October 28, 2021

4.2K
Human Mesenchymal Stem Cell Processing for Clinical Applications Using a Closed Semi-Automated Workflow
09:03

Human Mesenchymal Stem Cell Processing for Clinical Applications Using a Closed Semi-Automated Workflow

Published on: March 17, 2023

2.6K

Area of Science:

  • Life Sciences
  • Bioinformatics
  • Computational Biology

Background:

  • Ontology development in life sciences involves complex tasks like automated reasoning and quality control.
  • Existing tools often lack comprehensive automation for these processes.
  • The Web Ontology Language (OWL) API is foundational, but higher-level, integrated solutions are needed.

Purpose of the Study:

  • To develop an open-source library and command-line tool for automating common ontology development tasks.
  • To package OWL API functionality into a user-friendly system for the Open Biological and Biomedical Ontologies (OBO) community.
  • To facilitate efficient creation, maintenance, and release of high-quality ontologies.

Main Methods:

  • Introduced ROBOT (ROBOT is an OBO Tool), an open-source library and command-line tool.
  • Designed ROBOT to be callable from any Java Virtual Machine (JVM) language.
  • Enabled command-line execution on macOS, Linux, and Windows for various tasks like format conversion, reasoning, and reporting.

Main Results:

  • ROBOT provides commands for format conversion, running reasoners, creating import modules, and generating reports.
  • Commands can be integrated into larger workflows using task execution systems like GNU Make.
  • Workflows can be automated within continuous integration systems.

Conclusions:

  • ROBOT automates a wide range of ontology development tasks, adhering to OBO conventions.
  • It simplifies the configuration and execution of comprehensive, automated workflows.
  • ROBOT enhances ontology quality, robustness, and development efficiency, allowing developers to focus on core tasks.