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Updated: Jan 21, 2026

Prediction and Validation of Gene Regulatory Elements Activated During Retinoic Acid Induced Embryonic Stem Cell Differentiation
Published on: June 21, 2016
A new regulatory mechanism for Raf kinase activation, retinoic acid-bound Crabp1
Sung Wook Park1, Jennifer Nhieu1, Shawna D Persaud1
1Department of Pharmacology, University of Minnesota, Minneapolis, MN, 55455, USA.
Abstract:
The rapidly accelerated fibrosarcoma (Raf) kinase is canonically activated by growth factors that regulate multiple cellular processes. In this kinase cascade Raf activation ultimately results in extracellular regulated kinase 1/2 (Erk1/2) activation, which requires Ras binding to the Ras binding domain (RBD) of Raf. We recently reported that all-trans retinoic acid (atRA) rapidly (within minutes) activates Erk1/2 to modulate cell cycle progression in stem cells, which is mediated by cellular retinoic acid binding protein 1 (Crabp1). But how atRA-bound Crabp1 regulated Erk1/2 activity remained unclear. We now report Raf kinase as the direct target of atRA-Crabp1. Molecularly, Crabp1 acts as a novel atRA-inducible scaffold protein for Raf/Mek/Erk in cells without growth factor stimulation. However, Crabp1 can also compete with Ras for direct interaction with the RBD of Raf, thereby negatively modulating growth factor-stimulated Raf activation, which can be enhanced by atRA binding to Crabp1. NMR heteronuclear single quantum coherence (HSQC) analyses reveal the 6-strand β-sheet face of Crabp1 as its Raf-interaction surface. We identify a new atRA-mimicking and Crabp1-selective compound, C3, that can also elicit such an activity. This study uncovers a new signal crosstalk between endocrine (atRA-Crabp1) and growth factor (Ras-Raf) pathways, providing evidence for atRA-Crabp1 as a novel modulator of cell growth. The study also suggests a new therapeutic strategy by employing Crabp1-selective compounds to dampen growth factor stimulation while circumventing RAR-mediated retinoid toxicity.
Insights
Cellular retinoic acid binding protein 1 (Crabp1) directly targets Raf kinase, modulating cell growth. This discovery reveals a new therapeutic strategy using Crabp1-selective compounds to control growth factor signaling.
Area of Science:
- Molecular Biology
- Cell Signaling
- Endocrinology
Background:
- Raf kinase is activated by growth factors, leading to extracellular regulated kinase 1/2 (Erk1/2) activation.
- All-trans retinoic acid (atRA) rapidly activates Erk1/2 in stem cells via cellular retinoic acid binding protein 1 (Crabp1).
- The precise mechanism of atRA-bound Crabp1's regulation of Erk1/2 activity was previously unclear.
Purpose of the Study:
- To identify the direct target of atRA-bound Crabp1 in the Erk1/2 signaling pathway.
- To elucidate the molecular mechanism by which Crabp1 modulates Raf kinase activity.
- To explore the therapeutic potential of targeting the atRA-Crabp1-Raf interaction.
Main Methods:
- Investigated Raf kinase as a direct target of atRA-Crabp1.
- Utilized Nuclear Magnetic Resonance (NMR) heteronuclear single quantum coherence (HSQC) analyses to determine the Crabp1-Raf interaction surface.
- Identified and tested a novel atRA-mimicking compound, C3, with Crabp1-selective activity.
Main Results:
- Crabp1 functions as an atRA-inducible scaffold protein for the Raf/Mek/Erk pathway, independent of growth factors.
- Crabp1 competes with Ras for binding to the Raf Ras binding domain (RBD), negatively modulating growth factor-stimulated Raf activation.
- atRA binding to Crabp1 enhances its inhibitory effect on Raf activation.
- NMR studies identified the 6-strand β-sheet face of Crabp1 as the Raf-interaction surface.
- The compound C3 demonstrated similar activity to atRA in modulating Crabp1's interaction with Raf.
Conclusions:
- This study uncovers a novel crosstalk between endocrine (atRA-Crabp1) and growth factor (Ras-Raf) signaling pathways.
- atRA-Crabp1 acts as a direct modulator of cell growth by targeting Raf kinase.
- Crabp1-selective compounds offer a potential therapeutic strategy to inhibit growth factor signaling while avoiding retinoid toxicity.
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