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Detection of Targetable Alterations in Non-small Cell Lung Cancer using Next-generation Sequencing
Published on: October 10, 2025
Molecular testing strategies in non-small cell lung cancer: optimizing the diagnostic journey
Jeffrey P Gregg1, Tianhong Li2, Ken Y Yoneda3
1Department of Pathology and Laboratory Medicine, University of California, Davis Medical Center, CA, USA.
Abstract:
Molecular testing identifies patients with advanced non-small cell lung cancer (NSCLC) who may benefit from targeted therapy or immunotherapy (i.e., immune checkpoint inhibitor treatment for patients with high tumor mutational burden (TMB), microsatellite instability-high or mismatch repair-deficient tumors). Current guidelines state that molecular testing should be conducted at the time of initial diagnosis and tumor progression on targeted therapy. In real-world clinical practice in the United States (US), molecular testing is often not conducted or happens late in the diagnostic journey, resulting in delayed or inappropriate treatment. Herein, we review the rationale for molecular testing in advanced NSCLC, along with best-practice guidelines based on published recommendations and our own clinical experience, including a case study. We propose three strategies to optimize molecular testing in newly diagnosed patients with advanced NSCLC: (I) pulmonologists, interventional radiologists, or thoracic surgeons order molecular tests as soon as advanced NSCLC with an adenocarcinoma component is suspected; (II) liquid biopsies conducted early in the diagnostic pathway; and (III) pathologist-directed reflex testing, as conducted in other areas of oncology. To help facilitate these strategies, we outline our recommendations for optimal sample collection techniques and stewardship. In summary, we believe that implementation of these individual strategies will allow clinicians to effectively leverage available treatment options for advanced NSCLC, reducing the time to optimal treatment and improving patient outcomes.
Insights
Timely molecular testing for advanced non-small cell lung cancer (NSCLC) is crucial for guiding targeted therapy and immunotherapy. Optimizing testing through early ordering, liquid biopsies, and reflex testing improves patient outcomes.
Area of Science:
- Oncology
- Molecular Diagnostics
- Thoracic Surgery
Background:
- Advanced non-small cell lung cancer (NSCLC) requires molecular testing to identify eligibility for targeted therapies and immunotherapies.
- Current guidelines recommend molecular testing at diagnosis and progression, but real-world US practice often shows delays or omissions.
- Delayed testing can lead to suboptimal or inappropriate treatment decisions for NSCLC patients.
Purpose of the Study:
- To review the rationale and guidelines for molecular testing in advanced NSCLC.
- To propose strategies for optimizing molecular testing in newly diagnosed advanced NSCLC patients.
- To improve patient outcomes by reducing time to optimal treatment.
Main Methods:
- Review of published recommendations and clinical experience.
- Analysis of current practices in molecular testing for advanced NSCLC in the US.
- Proposal of three strategies: early test ordering, early liquid biopsies, and pathologist-directed reflex testing.
- Recommendations for optimal sample collection and stewardship.
Main Results:
- Molecular testing is often delayed or not performed in clinical practice, impacting treatment.
- Proposed strategies aim to integrate molecular testing earlier in the diagnostic workflow.
- Optimized testing facilitates the use of targeted therapies and immunotherapies.
Conclusions:
- Implementing strategies like early test ordering, liquid biopsies, and reflex testing can optimize molecular testing in advanced NSCLC.
- Streamlined molecular testing ensures timely access to appropriate treatments.
- Improved testing protocols are essential for enhancing patient outcomes in advanced NSCLC.
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