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Updated: Jan 21, 2026

"Cell Surface Capture" Workflow for Label-Free Quantification of the Cell Surface Proteome
Published on: March 24, 2023
Dataset for the spore surface proteome and hydrophobin A/RodA proteoforms of A.flavus
Mohammed Razeeth Shait Mohammed1, Muthu Kumar Balamurgan1, Rabbind Singh Amrathlal2
1Department of Proteomics, Aravind Medical Research Foundation, Dr. G. Venkataswamy Eye Research Institute, Aravind Eye Care System, Madurai, TamilNadu, India.
Abstract:
Fungal keratitis is a major sight-threatening corneal infection: and mycotic keratitis is more common in tropical parts of the world including India. Aspergillus flavus and Fusarium are the predominant causative agents of corneal infection. We extracted conidial surface proteins of A. flavus from saprophyte and clinical isolates and analyzed the proteins using high resolution mass spectrometry. The data revealed ecotype specific alteration in surface proteome since the proteome profile of the clinical isolates and saprophyte showed significant differences. Detailed examination of the mass spec data of RodA proteins extracted from polyacrylamide gels revealed the presence of two proteoforms of this protein. We also identified the mechanism of formation of these two isoforms. Detailed analysis of this data and the conclusions derived are described in the article, "Identification of the proteoforms of surface localized Rod A of A. flavus and determination of the mechanism of proteoform generation" [1].
Insights
This study reveals distinct surface protein profiles in Aspergillus flavus, a common cause of fungal keratitis. Researchers identified two unique forms of the RodA protein and the mechanism behind their generation.
Area of Science:
- Mycology
- Ophthalmology
- Proteomics
Background:
- Fungal keratitis is a significant cause of vision loss, particularly in tropical regions like India.
- Aspergillus flavus and Fusarium are primary pathogens responsible for mycotic keratitis.
Purpose of the Study:
- To analyze the surface proteome of Aspergillus flavus from both environmental and clinical sources.
- To identify and characterize different proteoforms of the RodA protein in Aspergillus flavus.
Main Methods:
- Extraction of conidial surface proteins from Aspergillus flavus isolates (saprophytic and clinical).
- High-resolution mass spectrometry for proteomic analysis.
- Detailed examination of RodA protein bands from polyacrylamide gels.
Main Results:
- Significant differences were observed in the surface proteome between clinical and saprophytic Aspergillus flavus isolates, indicating ecotype-specific alterations.
- Two distinct proteoforms of the RodA protein were identified.
- The mechanism responsible for the generation of these two RodA proteoforms was elucidated.
Conclusions:
- The study highlights ecotype-specific variations in the Aspergillus flavus surface proteome.
- The identification of RodA proteoforms and their generation mechanism provides new insights into fungal biology and pathogenesis.
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