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Updated: Jan 21, 2026

Gastric Mucosa Quantitative Polymerase Chain Reaction Analysis for Detecting Helicobacter pylori and Antibiotic Resistance
Published on: March 7, 2025
Mutant selection window of clarithromycin for clinical isolates of Helicobacter pylori
Zi-Han Feng1, Ling Fan2, Jing Yang2
1College of Basic Medical Sciences, Army Medical University, Chongqing, 400042, China.
Background:
Clarithromycin-resistance is becoming a global health concern in the treatment of Helicobacter pylori (H. pylori). The mutant prevention concentration (MPC) represent the propensities of antimicrobial agents to select resistant mutants. The concentration range between the minimum inhibitory concentration (MIC) and the MPC is defined as mutant selection window (MSW). In this study, we aimed to determine the cause of increasing clarithromycin resistance by investigating the MSW for clinical isolates of H. pylori.
Results:
A retrospective subgroup, which included 68 clarithromycin-sensitive H. pylori strains, was selected from a double-blind trial. The MICs and MPCs were determined using agar plate assays. Genotypic tests were performed using Sanger sequencing. All isolates were wild-type, and 33.82% (23/68) had a 0.016 mg/L MIC, 45.59% (31/68) had a 0.031 mg/L MIC, 16.18% (11/68) had a 0.062 ≤ MIC ≤ 0.125 mg/L, and 4.41% (3/68) had a 0.25 mg/L MIC. The MPC50/90 (mg/L) of the isolates were: 0.062/0.125, 0.125/0.5, 0.25/0.25 and 1/2, respectively. The MPCs showed a moderate correlation with the MICs (rs = 0.65, P < 0.0001). Using published data and MPC90, we calculated the time inside the MSW (TMSW) for low- and high-dose (200 or 500 mg bid) clarithromycin that were 6 and 0 h, 24 and 4 h, 15 and 2 h, 5 and 17 h for the strains with MICs (mg/L) of 0.016, 0.031, 0.062-0.125, and 0.25, respectively.
Conclusions:
This study showed that in the clarithromycin-sensitive clinical isolates of H. pylori, low-dose clarithromycin may lead to decreased drug sensitivity or even clarithromycin resistance; strains with a 0.25 mg/L MIC display a high risk of treatment failure.
Insights
Clarithromycin resistance in H. pylori is a growing concern. This study reveals that even low clarithromycin doses can decrease sensitivity, potentially leading to resistance and treatment failure in some patients.
Area of Science:
- Microbiology
- Pharmacology
- Infectious Diseases
Background:
- Clarithromycin resistance in Helicobacter pylori (H. pylori) poses a significant global health challenge.
- The mutant selection window (MSW) is crucial for understanding antimicrobial resistance development.
- Investigating the MSW for H. pylori is essential to address rising clarithromycin resistance.
Purpose of the Study:
- To determine the reasons behind increasing clarithromycin resistance in H. pylori clinical isolates.
- To analyze the mutant selection window (MSW) for clarithromycin-sensitive H. pylori strains.
Main Methods:
- Retrospective analysis of 68 clarithromycin-sensitive H. pylori strains from a clinical trial.
- Determination of minimum inhibitory concentrations (MICs) and mutant prevention concentrations (MPCs) using agar plate assays.
- Genotypic analysis via Sanger sequencing and calculation of time within the MSW (T_MSW) for different clarithromycin dosing regimens.
Main Results:
- A moderate correlation was observed between MICs and MPCs (r_s = 0.65, P < 0.0001).
- Calculated T_MSW varied significantly based on MIC values and clarithromycin dosage (200 or 500 mg bid).
- Strains with a 0.25 mg/L MIC exhibited prolonged T_MSW, especially with lower doses, indicating a high risk of treatment failure.
Conclusions:
- Low-dose clarithromycin may reduce drug sensitivity and promote resistance in H. pylori.
- H. pylori strains with a 0.25 mg/L MIC are at high risk for clarithromycin treatment failure.
- Understanding MSW dynamics is vital for optimizing clarithromycin therapy against H. pylori.
Related Concept Videos
Treating Helicobacter pylori in Peptic Ulcers: Antimicrobial Therapy
Antibiotic Selection
What is Natural Selection?
Types of Selection
Frequency-dependent Selection
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Critical attributes of NCIS include:

