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A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports

A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports

Published on: October 13, 2023

SOCCOMAS: a FAIR web content management system that uses knowledge graphs and that is based on semantic programming.

Lars Vogt¹, Roman Baum¹, Philipp Bhatty²

¹Institut für Evolutionsbiologie und Ökologie, Rheinische Friedrich-Wilhelms-Universität Bonn, An der Immenburg 1, 53121 Bonn, Germany.

Database : the Journal of Biological Databases and Curation

|August 9, 2019

Summary

SOCCOMAS is a framework for building FAIR Semantic Web Content Management Systems (S-WCMSs). It uses ontologies to manage content, ensuring data is findable, accessible, interoperable, and reusable.

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Using Visual and Narrative Methods to Achieve Fair Process in Clinical Care

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Using Visual and Narrative Methods to Achieve Fair Process in Clinical Care

Using Visual and Narrative Methods to Achieve Fair Process in Clinical Care

Published on: February 16, 2011

Area of Science:

Computer Science
Semantic Web Technologies
Knowledge Management

Background:

Traditional Content Management Systems (CMS) often lack robust mechanisms for data interoperability and reusability.
Achieving FAIR (findable, accessible, interoperable, reusable) data principles in web content management requires specialized frameworks.
Semantic Web technologies offer a powerful approach to structuring and managing complex data and metadata.

Purpose of the Study:

To introduce SOCCOMAS, a development framework for creating FAIR Semantic Web Content Management Systems (S-WCMSs).
To enable the management of web content through knowledge bases structured as semantic knowledge graphs.
To provide automated tracking of provenance, user contributions, and change history for S-WCMS content.

Main Methods:

Development of SOCCOMAS using the Semantic Programming Ontology (SPrO) for describing S-WCMS features and workflows.
Utilizing a Jena tuple store for managing semantic knowledge graphs of content and metadata.
Implementing a Java-based middleware interpreter for ontology-controlled S-WCMS behavior.
Providing access via a JavaScript AngularJS-based GUI and a SPARQL endpoint.

Main Results:

SOCCOMAS enables the creation of S-WCMSs that adhere to FAIR Guiding Principles.
Content and metadata are stored in semantic knowledge graphs, enhancing findability and interoperability.
Automated provenance tracking and versioning ensure data integrity and auditability.
The ontology-driven design allows for easy customization with minimal programming expertise.

Conclusions:

SOCCOMAS facilitates the seamless integration of conventional web technologies with semantic web technologies.
The framework supports the development of highly customizable and FAIR-compliant S-WCMSs.
SOCCOMAS empowers users to manage web content effectively through semantic knowledge graphs and automated tracking.