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Updated: Jan 21, 2026

Correlative Light and Electron Microscopy to Study Microglial Interactions with β-Amyloid Plaques
Published on: June 1, 2016
Ultrastructural Analyses of Microglial Interactions with Synapses
Marie-Ève Tremblay1,2, Ania K Majewska3,4
1Axe Neurosciences, Centre de Recherche du CHU de Québec-Université Laval, Québec, QC, Canada.
Abstract:
Immunohistochemical electron microscopy (EM) allows the identification of microglial cell bodies and processes, which are otherwise difficult to recognize based on their ultrastructural features. The technique has been essential in defining, at high spatial resolution, microglial interactions with neurons and synapses, thus providing, among other discoveries, important insights into their roles in synaptic pruning and stripping. In this protocol, we describe the preparation of mouse brain tissue for EM, the immunocytochemical staining against ionized calcium binding adaptor molecule 1, the imaging of microglial cell bodies and processes, and the analysis of microglial relationships with the synaptic neuropil.
Insights
Immunohistochemical electron microscopy (EM) visualizes microglial cells in the brain. This technique reveals microglial roles in synaptic pruning and stripping by detailing their interactions with neurons.
Area of Science:
- Neuroscience
- Cell Biology
- Immunohistochemistry
Background:
- Microglial cells are crucial for brain function but challenging to identify ultrastructurally.
- Understanding microglial morphology and interactions is key to neuroscience research.
Purpose of the Study:
- To present a protocol for immunohistochemical electron microscopy (EM) of mouse brain tissue.
- To enable high-resolution visualization of microglial cells and their synaptic relationships.
Main Methods:
- Tissue preparation for EM.
- Immunocytochemical staining for ionized calcium binding adaptor molecule 1 (Iba1).
- Imaging and analysis of microglial-synaptic interactions.
Main Results:
- Successful identification of microglial cell bodies and processes using Iba1 staining.
- Detailed visualization of microglial interactions with neuronal structures.
- Insights into microglial roles in synaptic pruning and stripping.
Conclusions:
- Immunohistochemical EM is an effective method for studying microglial ultrastructure and function.
- The protocol facilitates high-resolution analysis of microglial-neuronal communication.
- This technique advances understanding of microglial involvement in synaptic plasticity and neurological processes.
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