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Updated: Jan 21, 2026

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
Published on: December 7, 2021
Align to Define: Ecologically Meaningful Populations from Genomes
Sergey Stolyar1, Christopher J Marx1
1Department of Biological Sciences, Institute for Bioinformatics and Evolutionary Studies, Center for Modeling Complex Interactions, University of Idaho, Moscow, ID, USA.
Abstract:
Microbes in the same community but with distinct niches can have unique long stretches of perfect sequence identity due to recent genetic exchange. Arevalo et al. (2019) use this as a starting point for defining ecologically-relevant populations within a community and to identify the genes that appear to be driving divergence between populations.
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