Aberrantly hypermethylated tumor suppressor genes were identified in oral squamous cell carcinoma (OSCC)

Soo Yeon Kim1, Yu Kyeong Han2, Jae Min Song3,4

  • 1Department of Oral Pathology, School of Dentistry, Pusan National University, Yangsan, 50612, Gyeongsangnam-do, Republic of Korea.

Clinical Epigenetics
|August 14, 2019
PubMed
Abstract

Insights

Hypermethylation of TFPI2, SOX17, and GATA4 genes is common in oral squamous cell carcinoma (OSCC) and linked to patient survival. These genes show potential as biomarkers for improved OSCC prognosis and treatment.

Area of Science:

  • Oncology
  • Epigenetics
  • Molecular Biology

Background:

  • Oral squamous cell carcinoma (OSCC) is a complex disease influenced by genetic and epigenetic factors.
  • Environmental factors may contribute to OSCC pathogenesis through epigenetic modifications.
  • The role of tumor suppressor genes (TSGs) and their epigenetic silencing in OSCC remains incompletely understood.

Purpose of the Study:

  • To investigate the promoter methylation status of specific TSGs in OSCC.
  • To determine if TSG hypermethylation is associated with transcriptional silencing in OSCC.
  • To evaluate the potential of these TSGs as biomarkers for OSCC prognosis.

Main Methods:

  • Assessed methylation status of 14 TSGs in OSCC cell lines, primary tumors, and normal oral mucosa.
  • Utilized 5-aza-2'-deoxycytidine (5-aza-dC) to assess gene re-expression.
  • Confirmed methylation patterns using bisulfite sequencing and analyzed survival associations via TCGA database.

Main Results:

  • TFPI2, SOX17, and GATA4 were found to be frequently hypermethylated and transcriptionally silenced in OSCC cell lines.
  • Promoter hypermethylation of TFPI2, SOX17, and GATA4 was detected in 97%, 67%, and 33% of primary OSCC tumors, respectively.
  • This hypermethylation was cancer-specific, absent in normal oral mucosa, and significantly correlated with OSCC patient survival.

Conclusions:

  • TFPI2, SOX17, and GATA4 are frequently hypermethylated in OSCC in a cancer-specific manner.
  • Promoter hypermethylation regulates the transcriptional expression of these TSGs in OSCC.
  • These genes represent a promising synergistic biomarker set for improving OSCC prognosis and therapeutic strategies.

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