Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Diffusion01:12

Diffusion

216.5K
Diffusion is the passive movement of substances down their concentration gradients—requiring no expenditure of cellular energy. Substances, such as molecules or ions, diffuse from an area of high concentration to an area of low concentration in the cytosol or across membranes. Eventually, the concentration will even out, with the substance moving randomly but causing no net change in concentration. Such a state is called dynamic equilibrium, which is essential for maintaining overall...
216.5K
Diffusion01:21

Diffusion

6.2K
Diffusion is a type of passive transport. In passive transport, a substance tends to move from an area of high concentration to an area of low concentration until the concentration is equal across the space. For example, take the diffusion of substances through the air. When someone opens a perfume bottle in a room filled with people, the perfume is at its highest concentration in the bottle and is at its lowest at the edges of the room. The perfume vapor will diffuse, or spread away, from the...
6.2K
Water and Mineral Acquisition02:34

Water and Mineral Acquisition

35.4K
Specialized tissues in plant roots have evolved to capture water, minerals, and some ions from the soil. Roots exhibit a variety of branching patterns that facilitate this process. The outermost root cells have specialized structures called root hairs that increase the root surface, thus increasing soil contact. Water can passively cross into roots, as the concentration of water in the soil is higher than that of the root tissue. Minerals, in contrast, are actively transported into root cells.
35.4K
Cluster Sampling Method01:20

Cluster Sampling Method

14.1K
Appropriate sampling methods ensure that samples are drawn without bias and accurately represent the population. Because measuring the entire population in a study is not practical, researchers use samples to represent the population of interest.
To choose a cluster sample, divide the population into clusters (groups) and then randomly select some of the clusters. All the members from these clusters are in the cluster sample. For example, if you randomly sample four departments from your...
14.1K
Vesicular Tubular Clusters01:45

Vesicular Tubular Clusters

3.1K
After budding out from the ER membrane, some COPII vesicles lose their coat and fuse with one another to form larger vesicles and interconnected tubules called vesicular tubular clusters or VTCs. These clusters constitute a compartment at the ER-Golgi interface known as ERGIC (Endoplasmic Reticulum Golgi Intermediate Compartment). The ERGIC is a mobile membrane-bound cargo transport system that sorts proteins secreted from ER and delivers them to the Golgi.
With the help of motor proteins such...
3.1K
Facilitated Diffusion01:16

Facilitated Diffusion

1.2K
The plasma membrane, a critical structure in cellular biology, houses an array of transporters, or carrier proteins, interspersed within its lipid bilayer. These proteins play a crucial role in solute transport through facilitated diffusion, a form of passive diffusion that uses transporters to move the molecules across the membrane.
In this process, substrates such as organic compounds and ions interact with a transporter on one side, triggering conformational changes in proteins that enable...
1.2K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Infrared Spectroscopy of Protonated Ethane in Helium Droplets.

The journal of physical chemistry letters·2026
Same author

Exploring the Spectral Signatures of Large Amplitude Motions in the CH Stretching Region of the Vibrational Spectrum of CH<sub>5</sub><sup></sup>.

The journal of physical chemistry. A·2026
Same author

Rotation, Vibration, Torsion Coupling Effects in the Spectrum of Dimethyl Sulfide.

The journal of physical chemistry. A·2026
Same author

Dissecting halide-receptor interactions in "four wall" aryl-extended calix[4]pyrrole complexes: the role of the aromatic walls.

Physical chemistry chemical physics : PCCP·2026
Same author

A Tribute to Mark A. Johnson.

The journal of physical chemistry. A·2026
Same author

Cryogenic Vibrational Spectroscopy of the Deprotonated Dimer of Phosphoric Acid.

The journal of physical chemistry. A·2025

Related Experiment Video

Updated: Jan 21, 2026

The Diffusion of Passive Tracers in Laminar Shear Flow
08:01

The Diffusion of Passive Tracers in Laminar Shear Flow

Published on: May 1, 2018

9.0K

An Efficient Approach for Studies of Water Clusters Using Diffusion Monte Carlo.

Victor G M Lee1, Anne B McCoy1

  • 1Department of Chemistry , University of Washington , Seattle , Washington 98195 , United States.

The Journal of Physical Chemistry. A
|August 14, 2019
PubMed
Summary

This study introduces an efficient hybrid diffusion Monte Carlo (DMC) method for molecular clusters. The approach accurately determines zero-point energies and wave functions for water clusters, optimizing computational resources.

More Related Videos

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.6K
Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy
12:15

Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy

Published on: April 9, 2019

9.2K

Related Experiment Videos

Last Updated: Jan 21, 2026

The Diffusion of Passive Tracers in Laminar Shear Flow
08:01

The Diffusion of Passive Tracers in Laminar Shear Flow

Published on: May 1, 2018

9.0K
Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
09:17

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Published on: March 1, 2022

3.6K
Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy
12:15

Image Processing Protocol for the Analysis of the Diffusion and Cluster Size of Membrane Receptors by Fluorescence Microscopy

Published on: April 9, 2019

9.2K

Area of Science:

  • Computational Chemistry
  • Quantum Mechanics
  • Molecular Modeling

Background:

  • Studying molecular clusters like water requires accurate quantum mechanical methods.
  • Traditional diffusion Monte Carlo (DMC) can be computationally intensive for complex systems.

Purpose of the Study:

  • To develop and validate an efficient hybrid diffusion Monte Carlo (DMC) approach for molecular clusters.
  • To investigate the properties of small water clusters (n=1, 2, 3) using this novel method.

Main Methods:

  • A hybrid DMC approach combining importance sampling for intramolecular degrees of freedom and unguided DMC for intermolecular interactions.
  • Application to water monomers, dimers, and trimers, including nine isotopologues of the water trimer.

Main Results:

  • The hybrid DMC method significantly reduces simulation size for converged zero-point energies and ground state wave functions.
  • Demonstrated efficiency and accuracy in characterizing the low-energy minima landscape of water trimers.

Conclusions:

  • The hybrid DMC approach offers a computationally advantageous alternative for studying molecular clusters.
  • This method provides insights into the conformational sampling of water clusters on their potential energy surfaces.