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Updated: Jan 20, 2026

3D Cine Magnetic Resonance Imaging of Respiratory Motion in Mechanically Ventilated Mice and Rats
Published on: September 19, 2025
Free-running simultaneous myocardial T1/T2 mapping and cine imaging with 3D whole-heart coverage and isotropic
Haikun Qi1, Aurelien Bustin1, Gastao Cruz1
1School of Biomedical Engineering and Imaging Sciences, King's College London, London, United Kingdom.
Purpose:
To develop a free-running framework for 3D isotropic simultaneous myocardial T1/T2 mapping and cine imaging.
Methods:
Continuous data acquisition with 3D golden angle radial trajectory is used in conjunction with T2 preparation of varying echo times and inversion recovery (IR) pulses to enable simultaneous myocardial T1/T2 mapping and cine imaging. Data acquisition is retrospectively synchronized with ECG signal, and 1D respiratory self-navigation signal is extracted from the k-space center of all radial spokes. Respiratory binning is performed based on the estimated respiratory signal, enabling estimation and correction of 3D translational respiratory motion. Using high-dimensionality patch-based undersampled reconstruction with dictionary-based low-rank inversion, whole-heart T1/T2 maps and cine images can be generated with 2 mm isotropic spatial resolution. The proposed technique was validated in a standardised phantom and ten healthy subjects in comparison to conventional 2D imaging techniques.
Results:
Phantom T1 and T2 measurements demonstrated good agreement with 2D spin echo techniques. Septal T1 estimated with the proposed technique (1185.6 ± 49.8 ms) was longer than with a conventional breath-hold 2D IR-prepared sequence (1044.3 ± 26.7 ms), whereas T2 measurements (47.6 ± 2.5 ms) were lower than a breath-hold 2D gradient spin echo sequence (52.0 ± 1.8 ms). Precision of the proposed 3D mapping was higher than conventional 2D mapping techniques. Ejection fraction measured with the proposed 3D approach (63.8 ± 6.8%) agreed well with conventional breath-held multi-slice 2D cine (62.3 ± 6.4%).
Conclusions:
The proposed technique provides co-registered 3D T1/T2 maps and cine images with isotropic spatial resolution from a single free-breathing scan, thereby providing a promising imaging tool for whole-heart myocardial tissue characterization and functional evaluation.
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