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Updated: Jan 20, 2026

Identification of Circular RNAs using RNA Sequencing
Published on: November 14, 2019
Cocaine induces differential circular RNA expression in striatum
Qian Bu1,2, Hailei Long1, Xue Shao1
1National Chengdu Center for Safety Evaluation of Drugs, State Key Lab of Biotherapy/Collaborative Innovation Center of Biotherapy, West China Hospital, West China Medical School, Sichuan University, Chengdu, 610041, China.
Circular RNAs (circRNAs) in the brain show altered expression after cocaine use, potentially influencing neuroplasticity and addiction through miRNA interactions.
Area of Science:
- Neuroscience
- Molecular Biology
- Genetics
Background:
- Circular RNAs (circRNAs) are endogenous non-coding RNAs with miRNA sponge activity.
- circRNAs are abundant in the brain and linked to synaptic function.
- MicroRNAs (miRNAs) are implicated in synaptic plasticity, memory, and cocaine addiction.
Purpose of the Study:
- To investigate the expression profile of striatal circRNAs following cocaine self-administration in mice.
- To explore the potential role of circRNAs in the neurobiological effects of cocaine.
Main Methods:
- CircRNA microarray analysis to identify differentially expressed circRNAs in the striatum.
- Quantitative reverse transcription-PCR (qRT-PCR) for validation of selected circRNAs.
- Bioinformatic prediction of miRNA binding sites and associated neuroplasticity genes.
Main Results:
- 90 differentially expressed circRNAs were identified in mice after cocaine self-administration (18 up-regulated, 72 down-regulated).
- Expression patterns from microarray analysis were validated using qRT-PCR.
- One circRNA, mmu_circRNA_002381, was predicted to modulate neuroplasticity-associated genes like limk1 and bdnf.
Conclusions:
- CircRNAs exhibit altered expression in the striatum in response to cocaine self-administration.
- circRNAs may influence cocaine's behavioral effects by interacting with miRNAs.
- These findings suggest a novel role for circRNAs in the neurobiology of cocaine addiction.
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