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Updated: Jan 20, 2026

A Reporter Based Cellular Assay for Monitoring Splicing Efficiency
Published on: September 15, 2021
Splicing Mutations Impairing CDKL5 Expression and Activity Can be Efficiently Rescued by U1snRNA-Based Therapy
Dario Balestra1, Domenico Giorgio2, Matteo Bizzotto2
1Department of Life Sciences and Biotechnology, University of Ferrara, 44121 Ferrara, Italy.
Abstract:
Mutations in the CDKL5 gene lead to an incurable rare neurological condition characterized by the onset of seizures in the first weeks of life and severe intellectual disability. Replacement gene or protein therapies could represent intriguing options, however, their application may be inhibited by the recent demonstration that CDKL5 is dosage sensitive. Conversely, correction approaches acting on pre-mRNA splicing would preserve CDKL5 physiological regulation. Since ~15% of CDKL5 pathogenic mutations are candidates to affect splicing, we evaluated the capability of variants of the spliceosomal U1 small nuclear RNA (U1snRNA) to correct mutations affecting +1 and +5 nucleotides at the 5' donor splice site and predicted to cause exon skipping. Our results show that CDKL5 minigene variants expressed in mammalian cells are a valid approach to assess CDKL5 splicing pattern. The expression of engineered U1snRNA effectively rescued mutations at +5 but not at the +1 nucleotides. Importantly, we proved that U1snRNA-mediated splicing correction fully restores CDKL5 protein synthesis, subcellular distribution and kinase activity. Eventually, by correcting aberrant splicing of an exogenously expressed splicing-competent CDKL5 transgene, we provided insights on the morphological rescue of CDKL5 null neurons, reporting the first proof-of-concept of the therapeutic value of U1snRNA-mediated CDKL5 splicing correction.
Insights
Engineered U1 small nuclear RNA (U1snRNA) can correct splicing defects caused by CDKL5 gene mutations, restoring protein function. This approach offers a promising therapeutic strategy for CDKL5-related neurological disorders.
Area of Science:
- Genetics
- Molecular Biology
- Neuroscience
Background:
- Mutations in the CDKL5 gene cause a severe, incurable neurological disorder with early-onset seizures and intellectual disability.
- CDKL5 is dosage-sensitive, limiting gene or protein replacement therapies.
- Splicing correction offers a therapeutic avenue by preserving physiological gene regulation.
Purpose of the Study:
- To evaluate the potential of spliceosomal U1 small nuclear RNA (U1snRNA) variants to correct CDKL5 mutations affecting splicing.
- To assess the functional restoration of CDKL5 protein following splicing correction.
- To provide a proof-of-concept for U1snRNA-mediated splicing correction as a therapeutic strategy.
Main Methods:
- Utilized CDKL5 minigene variants in mammalian cells to analyze splicing patterns.
- Engineered U1snRNA variants were expressed to target mutations at the 5' donor splice site (+1 and +5 nucleotides).
- Assessed CDKL5 protein synthesis, subcellular localization, kinase activity, and neuronal morphology post-correction.
Main Results:
- CDKL5 minigene variants effectively modeled splicing defects.
- Engineered U1snRNA rescued splicing mutations at the +5 but not +1 nucleotide positions.
- U1snRNA-mediated splicing correction fully restored CDKL5 protein function and rescued neuronal morphology.
Conclusions:
- U1snRNA-mediated splicing correction is a viable therapeutic strategy for CDKL5 mutations affecting splicing.
- This approach demonstrates potential for treating CDKL5-related neurological disorders by restoring protein function and neuronal morphology.
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