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Updated: Jan 20, 2026

Assaying Protein Kinase Activity with Radiolabeled ATP
Published on: May 26, 2017
Protein kinase N controls a lysosomal lipid switch to facilitate nutrient signalling via mTORC1
Alexander Wallroth1, Philipp A Koch1, Andrea L Marat1
1Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), Berlin, Germany.
Abstract:
Mechanistic target of rapamycin (mTOR) kinase functions in two multiprotein complexes: lysosomal mTOR complex 1 (mTORC1) and mTORC2 at the plasma membrane. mTORC1 modulates the cell response to growth factors and nutrients by increasing protein synthesis and cell growth, and repressing the autophagy-lysosomal pathway1-4; however, dysfunction in mTORC1 is implicated in various diseases3,5,6. mTORC1 activity is regulated by phosphoinositide lipids7-10. Class I phosphatidylinositol-3-kinase (PI3K)-mediated production of phosphatidylinositol-3,4,5-trisphosphate6,11 at the plasma membrane stimulates mTORC1 signalling, while local synthesis of phosphatidylinositol-3,4-bisphosphate by starvation-induced recruitment of class II PI3K-β (PI3KC2-β) to lysosomes represses mTORC1 activity12. How the localization and activity of PI3KC2-β are regulated by mitogens is unknown. We demonstrate that protein kinase N (PKN) facilitates mTORC1 signalling by repressing PI3KC2-β-mediated phosphatidylinositol-3,4-bisphosphate synthesis downstream of mTORC2. Active PKN2 phosphorylates PI3KC2-β to trigger PI3KC2-β complex formation with inhibitory 14-3-3 proteins. Conversely, loss of PKN2 or inactivation of its target phosphorylation site in PI3KC2-β represses nutrient signalling via mTORC1. These results uncover a mechanism that couples mTORC2-dependent activation of PKN2 to the regulation of mTORC1-mediated nutrient signalling by local lipid signals.
Insights
Protein kinase N (PKN) regulates nutrient signaling by inhibiting PI3KC2-β, a key repressor of mTORC1 activity. This discovery reveals a novel mechanism linking mTORC2 activation to mTORC1-mediated nutrient responses.
Area of Science:
- Cellular signaling
- Molecular biology
- Biochemistry
Background:
- Mechanistic target of rapamycin (mTOR) kinase, functioning in mTORC1 and mTORC2 complexes, is crucial for cell growth and nutrient sensing.
- Dysregulation of mTORC1 is linked to various diseases, and its activity is modulated by phosphoinositide lipids.
- The regulation of PI3KC2-β localization and activity by mitogens, and its role in mTORC1 signaling, remains largely unknown.
Purpose of the Study:
- To elucidate the mechanism by which protein kinase N (PKN) influences mTORC1 signaling.
- To investigate the role of PKN in regulating PI3KC2-β activity and its impact on nutrient signaling downstream of mTORC2.
Main Methods:
- Investigated the interaction between PKN and PI3KC2-β.
- Utilized phosphoinositide lipid analysis to assess PI3KC2-β activity.
- Employed genetic manipulation (loss of PKN2) and site-directed mutagenesis to study the phosphorylation of PI3KC2-β.
Main Results:
- Demonstrated that PKN facilitates mTORC1 signaling by repressing PI3KC2-β-mediated synthesis of phosphatidylinositol-3,4-bisphosphate.
- Showed that active PKN2 phosphorylates PI3KC2-β, promoting its association with inhibitory 14-3-3 proteins.
- Confirmed that loss of PKN2 or disruption of PI3KC2-β phosphorylation impairs nutrient signaling via mTORC1.
Conclusions:
- Uncovered a novel mechanism where mTORC2-activated PKN2 phosphorylates PI3KC2-β, thereby repressing its lipid kinase activity.
- This regulation couples mTORC2 signaling to the control of mTORC1-mediated nutrient responses through local lipid signaling.
- Provides a new understanding of how cellular nutrient signaling pathways are interconnected and regulated.
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