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Updated: Jan 20, 2026

Large-scale Three-dimensional Imaging of Cellular Organization in the Mouse Neocortex
Published on: September 5, 2018
A null model of the mouse whole-neocortex micro-connectome
Michael W Reimann1, Michael Gevaert2, Ying Shi2
1Blue Brain Project, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015, Lausanne, Switzerland. michael.reimann@epfl.ch.
Researchers created a statistical model of the mouse neocortex connectome by combining macro- and micro-scale data. This model predicts neural targeting principles and reveals scale-invariant organization extending to individual neurons.
Area of Science:
- Neuroscience
- Computational Biology
- Connectomics
Background:
- Connectomics studies neural network structure at macro/meso and micro scales.
- Advances in macro/meso-scale connectomics provide region-to-region connectivity data.
- Micro-scale connectomics focuses on individual neuron connectivity.
Purpose of the Study:
- To build a statistical model of the micro-connectome for an entire mouse neocortex.
- To integrate macro/meso-scale and micro-scale connectomics data.
- To reveal and predict neural targeting principles.
Main Methods:
- Utilized available data on region-to-region connectivity.
- Incorporated individual whole-brain axon reconstructions.
- Developed a statistical modeling approach to combine data scales.
Main Results:
- Generated a first draft statistical model of the mouse neocortex micro-connectome.
- Identified a targeting principle predicting individual axon innervation from meso-scale data.
- Demonstrated that biological targeting trends are recreated across scales.
Conclusions:
- Scale-invariant topological organization of connectivity extends to individual neurons.
- The model serves as a null model for connectomics research.
- The model provides a substrate for whole-brain simulations.
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