Data on the characterization of phthalate-degrading bacteria from Asian carp microbiomes and riverine sediments

Steven A Kolb1, Edward J O'Loughlin2, Timothy C Gsell1

  • 1Governors State University, Division of Science, Mathematics and Technology, University Park, IL, 60484, USA.

Data in Brief
|August 31, 2019
PubMed

Related Concept Videos

Screening Marine Bacteria for the Isolation of Pollutant-Degrading Strains04:04

Screening Marine Bacteria for the Isolation of Pollutant-Degrading Strains

Source: Villela, H. D. M., et al. Prospecting Microbial Strains for Bioremediation and Probiotics Development for Metaorganism Research and Preservation. J. Vis. Exp. (2019).This video demonstrates the isolation of pollutant-degrading marine bacteria through serial dilution, colony selection, and growth in EE2-containing medium. By using EE2 as the sole carbon source, the protocol identifies bacterial strains capable of metabolizing this environmental...
158
Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing07:21

Tick Microbiome Characterization by Next-Generation 16S rRNA Amplicon Sequencing

Here we present a next-generation sequencing protocol for 16S rRNA sequencing which enables identification and characterization of microbial communities within vectors. This method involves DNA extraction, amplification and barcoding of samples through PCR, sequencing on a flow-cell, and bioinformatics to match sequence data to phylogenetic...
13.4K
Erythrocyte Sedimentation Rate: A Physics-Driven Characterization in a Medical Context08:07

Erythrocyte Sedimentation Rate: A Physics-Driven Characterization in a Medical Context

Erythrocyte sedimentation rate (ESR) is a physical parameter, often used in routine health checks and medical diagnosis. A theoretical model that allows to extract physically-meaningful parameters from the whole sedimentation curve, based on modern colloidal knowledge, has recently been developed. Here, we present a protocol to automatically collect the ESR over time, and extract the parameters of this recent model from this automated data collection. These refined parameters are also likely to...
4.0K
Macro-Rheology Characterization of Gill Raker Mucus in the Silver Carp, Hypophthalmichthys molitrix09:13

Macro-Rheology Characterization of Gill Raker Mucus in the Silver Carp, Hypophthalmichthys molitrix

This protocol presents a method to perform rheology characterization of mucus that resides on gill rakers (GRs) of the silver carp. Viscoelastic characteristics of GR-mucus, obtained by measuring viscosity, storage and loss moduli, are evaluated for the apparent yield stress to understand the filter feeding mechanism in...
3.5K
Selective Enrichment and Isolation of Oil-Degrading Marine Bacteria from Seawater Samples03:07

Selective Enrichment and Isolation of Oil-Degrading Marine Bacteria from Seawater Samples

Source: Villela, H. D. M., et al. Prospecting Microbial Strains for Bioremediation and Probiotics Development for Metaorganism Research and Preservation. J. Vis. Exp. (2019)This video demonstrates the selective isolation of oil-degrading marine bacteria by enriching seawater samples on oil-based media, enabling the recovery of pure strains with potential applications in crude oil bioremediation and environmental...
116
Selective Cleaning of Wild Caenorhabditis Nematodes to Enrich for Intestinal Microbiome Bacteria09:47

Selective Cleaning of Wild Caenorhabditis Nematodes to Enrich for Intestinal Microbiome Bacteria

Wild Caenorhabditis nematodes are associated with many microbes, often in the gut lumen or infecting the intestine. This protocol details a method to enrich unculturable microbes colonizing the intestine, taking advantage of the resistance of the dauer...
3.5K