Related Experiment Video
Updated: Jan 20, 2026

Whole-mount Clearing and Staining of Arabidopsis Flower Organs and Siliques
Published on: April 12, 2018
Clearing and staining small vertebrates for demonstrating ossification of the skeletal system using the KOH and
Robert B Reed1, Christy R Kendall1, Nicholas Tsangarides2
1Department of Biomedical and Diagnostic Sciences, College of Veterinary Medicine, The University of Tennessee, Knoxville, TN, USA.
Abstract:
Preparing articulated skeletons of small vertebrates is extremely difficult due to the presence of vast amounts of cartilage and/or the extremely small size of skeletal components. Clearing the tissues surrounding small skeletons and staining the bones in toto reveals the skeletal system without the risk of displacing the bony components. The specimens are first fixed and bleached which renders the tissues preserved and transparent. These specimens may then be exposed to alizarin red S which stains bone a pink to red colour making them visible through the transparent soft tissues. Toluidine blue may also be used to stain cartilage a blue colour. The Spalteholz staining method is cited, though the focus will be on the KOH and glycerine clearing method for macroscopic observation.
More Related Videos
Related Concept Videos
09:17Whole-mount Clearing and Staining of Arabidopsis Flower Organs and Siliques
05:23Demonstrating Hairy and Glabrous Skin Innervation in a 3D Pattern Using Multiple Fluorescent Staining and Tissue Clearing Approaches
08:52Adipo-Clear: A Tissue Clearing Method for Three-Dimensional Imaging of Adipose Tissue
06:14Novel Passive Clearing Methods for the Rapid Production of Optical Transparency in Whole CNS Tissue
08:24A Hydrophobic Tissue Clearing Method for Rat Brain Tissue
07:20A Tissue Clearing Method for Neuronal Imaging from Mesoscopic to Microscopic Scales

