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Computational Segmentation and Classification of Diabetic Glomerulosclerosis.

Brandon Ginley1, Brendon Lutnick1, Kuang-Yu Jen2

  • 1Departments of Pathology and Anatomical Sciences.

Journal of the American Society of Nephrology : JASN
|September 7, 2019
PubMed
Summary

Digital algorithms can now classify diabetic nephropathy (DN) kidney biopsies, matching pathologist accuracy. This computational approach offers improved precision for clinical diagnostics.

Keywords:
Computational renal pathologyDigital pathologyImage analysisTervaert's classificationdiabetic nephropathyglomerulus

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Area of Science:

  • Nephrology
  • Digital Pathology
  • Machine Learning

Background:

  • Diabetic nephropathy (DN) diagnosis relies on pathologist visual classification of glomerular lesions.
  • Inter-pathologist variability can affect diagnostic consistency.
  • Digital algorithms offer potential to standardize interpretation and reduce variability.

Purpose of the Study:

  • To develop a digital pipeline for classifying renal biopsies in diabetic nephropathy.
  • To combine traditional image analysis with machine learning for efficient and accurate structural quantification.
  • To reduce manual effort and incorporate biological prior information into the classification model.

Main Methods:

  • Developed a digital pipeline integrating image analysis and machine learning for DN classification.
  • Simplified glomerular structure into nuclei, capillary lumina, Bowman spaces, and PAS-positive structures.
  • Utilized convolutional neural networks for boundary and nuclei detection, and unsupervised techniques for other structures.
  • Defined digital features quantifying DN progression and employed a recurrent network for classification.

Main Results:

  • Digital classification showed moderate agreement with a senior pathologist (κ = 0.55).
  • Agreement with two other pathologists was κ1 = 0.68 and κ2 = 0.48.
  • High accuracy was achieved in detecting glomerular boundaries (0.93±0.04), nuclei (0.94 sensitivity, 0.93 specificity), and structural components (0.95 sensitivity, 0.99 specificity).

Conclusions:

  • Computational approaches are comparable to human visual classification in assessing diabetic nephropathy.
  • Digital classification can enhance precision in clinical decision-making workflows.
  • Histologic image features derived computationally hold significant diagnostic value for augmenting clinical diagnostics.