Environmental filtering structures fungal endophyte communities in tree bark

Peter T Pellitier1, Donald R Zak1,2, Sydney O Salley1

  • 1School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, USA.

Molecular Ecology
|September 9, 2019
PubMed
Summary

Tree bark composition shapes fungal endophyte communities, acting as an environmental filter rather than a passive reservoir. This study reveals unique fungal assemblages in different tree species, influencing plant microbiome diversity.

Related Concept Videos

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa12:05

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa

This protocol presents a reliable and efficient workflow from sample collection to data analysis for profiling the endophytic and epiphytic bacterial microbiomes present in the bark of Populus...
1.2K
Establishing Fungal Entomopathogens as Endophytes: Towards Endophytic Biological Control15:14

Establishing Fungal Entomopathogens as Endophytes: Towards Endophytic Biological Control

This protocol demonstrates two inoculation methods to introduce the fungal entomopathogen Beauveria bassiana as an endophyte in the common bean (Phaseolus vulgaris), in preparation for subsequent evaluations of endophytic biological...
35.4K
Technique for Studying Arthropod and Microbial Communities within Tree Tissues05:30

Technique for Studying Arthropod and Microbial Communities within Tree Tissues

We provide a technique to preserve intact tree phloem and prepare it for observation. We create an apparatus called a phloem sandwich that allows for the introduction and observation of arthropods, microbes, and other organisms that inhabit phloem tissues.
10.8K
Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA08:04

Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA

We describe a protocol for filtration of water samples with a filter cartridge and extraction of environmental DNA (eDNA) without having to cut open the housing to remove the filter. This protocol is developed for metabarcoding eDNA from fishes, but is also applicable to eDNA from other...
28.1K
Isolation, Characterization, and Total DNA Extraction to Identify Endophytic Fungi in Mycoheterotrophic Plants06:53

Isolation, Characterization, and Total DNA Extraction to Identify Endophytic Fungi in Mycoheterotrophic Plants

The current article aims to provide detailed and adequate protocols for the isolation of plant-associated endophytic fungi, long-term preservation of isolates, morphological characterization, and total DNA extraction for subsequent molecular identification and metagenomic...
3.9K
The Floating Lab: Standard Operational Procedure for Collecting and Filtering Seawater Samples from Operating Ferries for Environmental DNA Analysis06:22

The Floating Lab: Standard Operational Procedure for Collecting and Filtering Seawater Samples from Operating Ferries for Environmental DNA Analysis

Here, we present a novel protocol to retrieve marine eDNA through the collection and filtration of seawater samples from operating ferries and other commercial...
1.0K