Related Experiment Video
Updated: Jan 19, 2026

A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa
Published on: June 27, 2025
Environmental filtering structures fungal endophyte communities in tree bark
Peter T Pellitier1, Donald R Zak1,2, Sydney O Salley1
1School for Environment and Sustainability, University of Michigan, Ann Arbor, MI, USA.
Tree bark composition shapes fungal endophyte communities, acting as an environmental filter rather than a passive reservoir. This study reveals unique fungal assemblages in different tree species, influencing plant microbiome diversity.
Area of Science:
- Plant-microbiome interactions
- Fungal community ecology
- Forest ecology
Background:
- Endophyte communities in inner tree bark are poorly understood.
- The role of bark in structuring these communities is debated: environmental filter vs. passive reservoir.
Purpose of the Study:
- To investigate if tree bark species act as environmental filters for endophyte communities.
- To characterize fungal communities within the inner bark of five dominant tree species.
- To determine the influence of bark chemistry on fungal community composition.
Main Methods:
- Developed a novel DNA extraction method for surface-sterilized inner bark.
- Conducted a culture-independent study on 120 trees across five species in a temperate forest.
- Analyzed fungal communities using DNA sequencing and correlated with bark chemical properties (pH, phenolics).
Main Results:
- Each tree species harbored distinct inner bark fungal communities.
- Angiosperm and gymnosperm hosts showed significantly different fungal assemblages.
- Bark chemical components (pH, phenolics) influenced fungal community structure.
- Inner bark fungal communities were highly diverse (117-171 OTUs/tree), dominated by Ascomycetes.
Conclusions:
- Tree bark acts as an environmental filter, actively structuring inner bark fungal communities.
- These findings support a role for plant-specific fungal communities in the plant microbiome.
- Further research is needed to understand the ecological significance of these endophytes.
Related Concept Videos
12:05A Workflow for the Quantitative Assessment of the Endophytic and Epiphytic Bacterial Microbiomes of the Bark of Populus trichocarpa
15:14Establishing Fungal Entomopathogens as Endophytes: Towards Endophytic Biological Control
05:30Technique for Studying Arthropod and Microbial Communities within Tree Tissues
08:04Use of a Filter Cartridge for Filtration of Water Samples and Extraction of Environmental DNA
06:53Isolation, Characterization, and Total DNA Extraction to Identify Endophytic Fungi in Mycoheterotrophic Plants
06:22The Floating Lab: Standard Operational Procedure for Collecting and Filtering Seawater Samples from Operating Ferries for Environmental DNA Analysis

